Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq31517 98.7 8e-16 seq138370 89.7 4e-13 >seq31517 Length=16670 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || || || ||||||||||| |||| || | || |||| || Sbjct 3687 ACCAAGTGAAGGGTTGATTCCTTCTGAATATTGTAGTCAGCAAGGGTACGGCCGTCCTCG 3628 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCT 48676 | ||||||||| ||||| |||| | ||| ||||||| ||||| | || ||||| || Sbjct 3627 AGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCCGGTGGGATC-CCTTCCTTATCCTG 3569 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||||||| || ||| | | || || || ||||||||||| || || || || Sbjct 3568 AATCTTTGCCTTGACATTGTCAATAGTATCCGAACTCTCCACCTCCAAAGTGATGGTCTT 3509 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || |||| ||| || ||||| ||||||||| Sbjct 3508 CCCAGTCAGAGTCTTCACAAAGATCTGCATC 3478 >seq138370 Length=13449 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| |||||| || ||||| ||||||| || | | | || ||||| || Sbjct 5498 ATGAAGAGTGGACTCTTTCTGGATATTATAATCAGCAAGTGTCCTCCCATCTTCCAATTG 5439 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||||| ||||| |||| | ||| || |||| || | |||||||| || |||||| Sbjct 5438 TTTACCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGAATCTT 5379 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | | | || || |||||||||| |||||||| ||||| || Sbjct 5378 CGCCTTCACATTATCAATGGTATCCGAGCTTTCCACCTCCAAAGTAATCGTCTTTCCGGT 5319 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||||||||| Sbjct 5318 TAATGTCTTAACGAAAATCTGCAT 5295 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||||||||| | ||| | || || || || || || || |||||||||| Sbjct 5293 CCTCCCCTTAGCCGAAGCACAAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCAGCC 5234 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | ||| | || |||| ||| || || ||||| || || | ||||||||| | || Sbjct 5233 AAAGTGCGACCATCTTCCAGCTGTTTTCCAGCAAAGATAAGCCTCTGTTGATCTGGTGGG 5174 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||||| ||| || | | | | || || ||| || Sbjct 5173 ATTCCTTCCTTATCTTGGATCTTAGCTTTCACGTTATCAATGGTGTCCGAGCTCTCGACT 5114 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| |||||||| || || ||||| || || || ||||||||||| Sbjct 5113 TCCAAAGTAATCGTCTTCCCGGTCAATGTCTTAACGAAAATCTGCAT 5067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379737119794725