Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq94777 87.8 3e-12 seq78926 86.0 1e-11 seq62270 86.0 1e-11 seq13608 86.0 1e-11 seq1084 86.0 1e-11 >seq94777 Length=27983 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 169725 TTAGGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTC 169784 || ||||||||| ||| | |||| |||| ||||||||||| |||||| || |||||||| Sbjct 15017 TTGGGATTGTAGTTCAATCGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGTTGCGGGTTC 15075 Query 169785 GAGCCCCGTCAGTCC 169799 ||||||||||||||| Sbjct 15076 GAGCCCCGTCAGTCC 15090 >seq78926 Length=9965 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| | || | |||| ||||||||||| |||||| || ||||||||||| Sbjct 4647 GGATTGTAGTTCAATAGG-CAAGAGCACCGCCCTGTCAAGGCGGACGTTGCGGGTTCGAG 4705 Query 169788 CCCCGTCAGTCCTG 169801 |||||||||||||| Sbjct 4706 CCCCGTCAGTCCTG 4719 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| | || | |||| ||||||||||| |||||| || ||||||||||| Sbjct 5330 GGATTGTAGTTCAATAGG-CAAGAGCACCGCCCTGTCAAGGCGGACGTTGCGGGTTCGAG 5272 Query 169788 CCCCGTCAGTCCTG 169801 |||||||||||||| Sbjct 5271 CCCCGTCAGTCCTG 5258 >seq62270 Length=5479 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 169726 TAGGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCG 169785 ||||||||||| ||| | || | |||| ||||||||||| |||||| || ||||||||| Sbjct 3144 TAGGATTGTAGTTCAATAGG-CAAGAGCACCGCCCTGTCAAGGCGGACGTTGCGGGTTCG 3202 Query 169786 AGCCCCGTCAGTCC 169799 |||||||||||||| Sbjct 3203 AGCCCCGTCAGTCC 3216 >seq13608 Length=4547 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 169726 TAGGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCG 169785 ||||||||||| ||| | || | |||| ||||||||||| |||||| || ||||||||| Sbjct 2900 TAGGATTGTAGTTCAATAGG-CAAGAGCACCGCCCTGTCAAGGCGGACGTTGCGGGTTCG 2958 Query 169786 AGCCCCGTCAGTCC 169799 |||||||||||||| Sbjct 2959 AGCCCCGTCAGTCC 2972 >seq1084 Length=78367 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| | |||| |||| ||||||||||| |||||| || ||||||||||| Sbjct 70883 GGATTGTAGTTCAATCGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGTTGCGGGTTCGAG 70941 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 70942 CCCCGTCAGTCC 70953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 775118547570000