Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq106419 129 7e-25 seq73953 98.7 1e-15 seq49990 98.7 1e-15 >seq106419 Length=70059 Score = 129 bits (142), Expect = 7e-25 Identities = 278/416 (67%), Gaps = 0/416 (0%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | || || ||||| ||| | || ||||| | || |||||| | ||| || Sbjct 23427 GAGGTCGTAGAGTTTCTGAAGAAGCCAGAGAGGTTCACTGCTGTTGGTGCTAGGATTCCA 23486 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 || | ||||| | ||| ||||| || |||||||| || || ||| || || Sbjct 23487 AAGGGTGTTCTTCTTGTTGGTCCTCCAGGAACCGGAAAGACACTGCTAGCCAAGGCTATT 23546 Query 175351 GCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTT 175410 || |||||| || ||| ||||| || || | || | ||||| ||||||||| Sbjct 23547 GCTGGTGAAGCAGGTGTTCCATTTTTCTCTATTTCAGGTTCAGAGTTTGTTGAGATGTTT 23606 Query 175411 GTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCA 175470 |||||||| |||||| ||| ||| | ||||| || ||| ||| || ||| || Sbjct 23607 GTTGGTGTTGGTGCCTCAAGAGTTAGAGATCTTTTCAAAAAGGCCAAGGAGAATGCCCCT 23666 Query 175471 TGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATG 175530 ||||| || || ||||||| |||||||| || || | |||| | | ||||| | Sbjct 23667 TGTATCGTATTTGTTGATGAAATTGATGCTGTTGGGAGGCAAAGAGGGACTGGTATTGGA 23726 Query 175531 CCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 | ||||| || ||||||||||| | || || || | || || |||||||||||| Sbjct 23727 GGGGGTAATGATGAAAGAGAACAAACCCTGAACCAGCTTTTGACAGAAATGGATGGCTTT 23786 Query 175591 GACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || | ||||| ||| | || |||| || || || || | || || ||||| Sbjct 23787 GAAGGAAACACTGGTATTATTGTGGTTGCAGCTACCAACCGTGCAGACATTCTTGA 23842 >seq73953 Length=35596 Score = 98.7 bits (108), Expect = 1e-15 Identities = 227/341 (67%), Gaps = 16/341 (5%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || ||||||||||| | || | || | || || || | ||| ||||| Sbjct 24531 CCAGGGACCGGAAAGACCCTTTTGGCTAGGGCGGTTGCCGGAGAGGCGGGTGTGCCATTT 24472 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | || | | || || || | ||||| ||||| ||||| |||||| Sbjct 24471 TTCTCGTGTGCGGCTTCGGAGTTCGTTGAACTTTTTGTGGGTGTTGGTGCATCTAGGGTT 24412 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA-----CCATGTATTGTCTTCATTGATG 175489 | ||||| ||||| | || |||||| | || ||||| || || ||||||| Sbjct 24411 AGGGATCTTTTTGAGAAGGC-----AAAATCGAAAGCACCTTGTATAGTGTTTATTGATG 24357 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAG 175549 |||| |||||||| || | |||| | | || ||| | | | |||||| || || | Sbjct 24356 AGATAGATGCGGTTGGAAGGCAAAGAGGGGCGGGTCTTGGGGGCGGAAATGATGAAAGGG 24297 Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT---TGACAATGAGACTGGCA 175606 ||||||| ||||||||| | | || || ||||| || || || ||| |||| Sbjct 24296 AACAAACTATTAATCAATTGTTGACGGAAATGGACGGGTTTTCTGGGAAT---TCTGGTG 24240 Query 175607 TTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 || | ||| | ||||| ||||| || |||| | |||||| Sbjct 24239 TTATTGTTTTGGCGGCTACTAACCGGCCGGATGTTCTTGAT 24199 >seq49990 Length=8241 Score = 98.7 bits (108), Expect = 1e-15 Identities = 227/341 (67%), Gaps = 16/341 (5%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || ||||||||||| | || | || | || || || | ||| ||||| Sbjct 3896 CCAGGGACCGGAAAGACCCTTTTGGCTAGGGCGGTTGCCGGAGAGGCGGGTGTGCCATTT 3955 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | || | | || || || | ||||| ||||| ||||| |||||| Sbjct 3956 TTCTCGTGTGCGGCTTCGGAGTTCGTTGAACTTTTTGTGGGTGTTGGTGCATCTAGGGTT 4015 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA-----CCATGTATTGTCTTCATTGATG 175489 | ||||| ||||| | || |||||| | || ||||| || || ||||||| Sbjct 4016 AGGGATCTTTTTGAGAAGGC-----AAAATCGAAAGCACCTTGTATAGTGTTTATTGATG 4070 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAG 175549 |||| |||||||| || | |||| | | || ||| | | | |||||| || || | Sbjct 4071 AGATAGATGCGGTTGGAAGGCAAAGAGGGGCGGGTCTTGGGGGCGGAAATGATGAAAGGG 4130 Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT---TGACAATGAGACTGGCA 175606 ||||||| ||||||||| | | || || ||||| || || || ||| |||| Sbjct 4131 AACAAACTATTAATCAATTGTTGACGGAAATGGACGGGTTTTCTGGGAAT---TCTGGTG 4187 Query 175607 TTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 || | ||| | ||||| ||||| || |||| | |||||| Sbjct 4188 TTATTGTTTTGGCGGCTACTAACCGGCCGGATGTTCTTGAT 4228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594641375196000