Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq31517 123 4e-23 seq38170 104 4e-17 seq138370 102 1e-16 seq40372 87.8 3e-12 >seq31517 Length=16670 Score = 123 bits (136), Expect = 4e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || |||||||||| || || || || | ||| | |||||| || || Sbjct 2574 ATTTGCATCCCTCCTCTCAATCTGAGGACAAGGTGGAGTGTGGACTCTTTTTGGATGTTG 2515 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || |||| || || | || || | ||| ||||||||||| || ||||| || ||| Sbjct 2514 TAATCGGCCAAAGTACGGCCGTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTTTGCTGA 2455 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| |||||||| |||||||| ||||||| || | || ||| ||||| || Sbjct 2454 TCTGGAGGAATTCCTTCCTTATCTTGGATTTTGGCCTTGACGTTATCAATTGTATCAGAG 2395 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || ||||| || || || || ||||| ||||| || || || ||||| Sbjct 2394 CTCTCGACCTCGAGAGTAATGGTCTTTCCAGTTAGGGTTTTCACGAAGATCTGCAT 2339 Score = 120 bits (132), Expect = 5e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||||||||| |||| || | || | || || || ||||||||| Sbjct 3024 ATACCACCTCTCAATCGAAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTATAGTCG 2965 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | || || | ||||| |||||||| || || ||||| || || || Sbjct 2964 GCTAGAGTACGGCCGTCTTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGG 2905 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| |||||||| || |||| ||| | || ||| ||||| || ||| Sbjct 2904 GGAATACCTTCCTTATCTTGGATCTTGGCTTTCACGTTATCAATGGTATCCGAGCTTTCA 2845 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| | |||||| || || || || || || || || || ||||||||| Sbjct 2844 ACTTCCAAAGTTATGGTCTTTCCAGTCAGGGTCTTAACGAAGATTTGCATT 2794 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||||||||| |||| ||| | || | || || |||||| ||||| Sbjct 3252 ATACCACCTCTCAATCGAAGAACCAAATGAAGAGTGGATTCCTTCTGAATATTGTAGTCA 3193 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | || || || ||||| ||||| ||||| || || || Sbjct 3192 GCAAGTGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATTAACCTCTGCTGGTCTGGT 3133 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || |||||||| || || | || | ||| || || || ||| |||| Sbjct 3132 GGGATACCCTCCTTATCTTGGATCTTTGCCTTAACATTGTCTATGGTGTCTGAACTCTCA 3073 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| || || || || || | || || || || || ||||| Sbjct 3072 ACCTCCAAAGTGATGGTCTTTCCGGTCAATGTCTTAACGAAGATCTGCAT 3023 >seq38170 Length=7308 Score = 104 bits (114), Expect = 4e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || |||||||||| ||||| | || | |||||||||||||| || | | Sbjct 6491 ATGTTGTAGTCGGATAGGGTTCTGCCGCCTTCGAGCTGTTTTCCGGCAAAGATGAGACGT 6550 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| || || || || |||||||| ||||| || |||| ||| | ||| || || Sbjct 6551 TGTTGGTCCGGTGGGATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTG 6610 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || || ||||| ||||| ||||| ||||| | ||||| ||||| || || || ||| Sbjct 6611 TCAGAGGATTCAACCTCTAGGGTTATGGTTTTTTCAGTTAGGGTTTTCACGAAGATCTGC 6670 Query 193359 ATTTT 193363 || || Sbjct 6671 ATCTT 6675 >seq138370 Length=13449 Score = 102 bits (112), Expect = 1e-16 Identities = 166/238 (70%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||| |||| || || ||||| | || | ||||| ||||| || ||| Sbjct 4840 ATCCCTCCTCTTAATCTGAGAACAAGATGAAGGGTGGATTCTTTTTGGATATTGTAATCG 4781 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | ||| || | || || | || ||||||||||| || | ||| || || || || Sbjct 4780 GCTAAAGTACGGCCGTCTTCAAGCTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGT 4721 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| || |||| || | || || || |||||| ||| Sbjct 4720 GGAATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTGTCTATTGTGTCGGAACTCTCG 4661 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT-TTTATTA 193367 ||||| ||||| || || || || || || || || ||||| |||||||| | ||||| Sbjct 4660 ACTTCAAGAGTGATTGTCTTTCCGGTGAGGGTCTTAACAAAGATTTGCATCTGTATTA 4603 >seq40372 Length=8222 Score = 87.8 bits (96), Expect = 3e-12 Identities = 163/231 (71%), Gaps = 9/231 (4%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCT-CTTTAGAAATATTATAGTC 193189 || || || ||||||| || ||||||||||| |||| | |||| | ||||| || || Sbjct 807 ATGCCTCCCCTCAATCTCAGAACCAGATGCAACGTAGATTCCTTTTG--ATATTGTAATC 864 Query 193190 GGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGG 193249 | | | ||||| | ||| || || ||||| ||||| || || || | ||| ||||| || Sbjct 865 CGCT-AGGTTCT-GCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGG 922 Query 193250 AGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTC 193309 ||| || || || || || || || |||| || | || | || ||||| ||| || Sbjct 923 AGGAATACCCTCCTTGTCCTGAATCTTGGCCTTCACGTT--ATATTGTATCAGAACTTTC 980 Query 193310 AACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || | || || ||||| || |||| | ||| || || || ||||| Sbjct 981 AACCTCCAACGTAAT-GTTTTTCCCGTTAATG-TTTCACGAAGATCTGCAT 1029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896746548294000