Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq138370 123 4e-23 seq31517 122 1e-22 seq40372 93.3 6e-14 >seq138370 Length=13449 Score = 123 bits (136), Expect = 4e-23 Identities = 169/235 (72%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 155816 TAATAAA-ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCG 155874 ||||| | |||||||| ||| |||| || | || ||||| || || || | ||||||| Sbjct 4603 TAATACAGATGCAAATCTTTGTTAAGACCCTCACCGGAAAGACAATCACTCTTGAAGTCG 4662 Query 155875 AAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTC 155934 | ||| || | || ||||| || || || ||||| ||||||||||| || | Sbjct 4663 AGAGTTCCGACACAATAGACAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATTCCAC 4722 Query 155935 CAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAG 155994 |||| || |||||| | || | |||||| |||||||| ||||| | | |||||| | | Sbjct 4723 CAGACCAGCAAAGACTTATCTTTGCCGGAAAGCAGCTTGAAGACGGCCGTACTTTAGCCG 4782 Query 155995 ATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 |||| ||||| ||||| | || |||||| | || | ||||||||||| || Sbjct 4783 ATTACAATATCCAAAAAGAATCCACCCTTCATCTTGTTCTCAGATTAAGAGGAGG 4837 Score = 102 bits (112), Expect = 1e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| || | || |||||||| || || || ||||| ||| ||| Sbjct 4839 ATGCAGATTTTCGTTAAGACCCTCACCGGAAAAACCATCACTTTGGAAGTTGAAAGCTCT 4898 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| ||| ||| || ||||| ||||||||||| || ||||| ||| Sbjct 4899 GACACCATTGATAACGTCAAAGCTAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAA 4958 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | |||| ||||| || || ||||| || | |||| | | ||||| || Sbjct 4959 CAAAGGCTCATTTTCGCCGGAAAACAACTCGAGGACGGCCGAACCCTGGCTGATTACAAC 5018 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || || ||||| || Sbjct 5019 ATCCAGAAAGAGTCCACTCTCCATTTGGT 5047 Score = 86.0 bits (94), Expect = 9e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || |||| ||||| || ||||| || ||||| || || || ||| || Sbjct 5294 AATGCAGATTTTCGTTAAGACATTAACCGGAAAGACGATTACTTTGGAGGTGGAAAGCTC 5353 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || ||||| || || || ||||| || || || || || || || Sbjct 5354 GGATACCATTGATAATGTGAAGGCGAAGATTCAGGATAAGGAGGGAATCCCACCGGACCA 5413 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || ||||| | ||| ||||| || | |||||| || || | | |||||||| Sbjct 5414 GCAGAGGTTGATCTTTGCTGGTAAACAATTGGAAGATGGGAGGACACTTGCTGATTATAA 5473 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 ||| |||||| | || |||||| Sbjct 5474 TATCCAGAAAGAGTCCACTCTTCAT 5498 >seq31517 Length=16670 Score = 122 bits (134), Expect = 1e-22 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 155810 TTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGA 155869 ||||||| | | ||||| || || | ||||| | |||||||| || ||||| | || Sbjct 2326 TTTATGTCAACAGATGCAGATCTTCGTGAAAACCCTAACTGGAAAGACCATTACTCTCGA 2385 Query 155870 AGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCAT 155929 ||||| ||||||| ||| ||||| || ||||| |||||||| ||||| || Sbjct 2386 GGTCGAGAGCTCTGATACAATTGATAACGTCAAGGCCAAAATCCAAGATAAGGAAGGAAT 2445 Query 155930 ACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTT 155989 |||||||| || ||||||||||| | |||||| ||||| ||||| || | | ||||| Sbjct 2446 TCCTCCAGATCAGCAAAGATTGATCTTTGCCGGAAAGCAACTCGAGGACGGCCGTACTTT 2505 Query 155990 ATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 | ||||| || || |||||| | || || || | || | ||||| ||||| || Sbjct 2506 GGCCGATTACAACATCCAAAAAGAGTCCACACTCCACCTTGTCCTCAGATTGAGAGGAGG 2565 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || ||||||||||| || || || || || || || ||| Sbjct 3251 ATGCAGATCTTTGTTAAGACGTTGACTGGAAAGACAATCACTTTGGAGGTTGAGAGCTCT 3310 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || || || ||||| || ||||| || || ||||| || Sbjct 3311 GATACTATCGATAACGTTAAGGCAAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAG 3370 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || |||||||| | ||| |||||||||||||| ||| Sbjct 3371 CAGAGATTGATCTTTGCAGGTAAGCAGCTCGAGGAT 3406 >seq40372 Length=8222 Score = 93.3 bits (102), Expect = 6e-14 Identities = 133/184 (72%), Gaps = 5/184 (3%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| | ||||||||||| ||||| | || || || |||| Sbjct 1485 ATGCAGATCTTCGTGAAAACCCTTACTGGAAAAACCATTACTCTGGA-GTAGAGAGTTCT 1427 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || ||| ||||| ||||| ||||||||||| |||||||| ||| Sbjct 1426 GATACAATCGATAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAA 1367 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATAC--CAGAACTTTATCAGATTATA 156000 ||| | | || | ||||| || ||||| |||| || |||||| || | ||||||| Sbjct 1366 CAACGGCTCATCTTCGCCGGGAAACAGCT--AAGAGACGGCAGAACCCTAGCTGATTATA 1309 Query 156001 ATAT 156004 | || Sbjct 1308 ACAT 1305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729506452470000