Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq138370 147 4e-30 seq31517 109 1e-18 seq40372 93.3 8e-14 >seq138370 Length=13449 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||| | || | ||| | ||| | |||||| |||||||||||||| Sbjct 5522 ACCACCACGAAGACGAAGAACAAGATGAAGAGTGGACTCTTTCTGGATATTATAATCAGC 5463 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | ||| | |||| ||||||||||||||||||||||| || ||||| || || ||||| Sbjct 5462 AAGTGTCCTCCCATCTTCCAATTGTTTACCAGCAAAGATCAACCTCTGCTGGTCCGGTGG 5403 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||| || ||||| || || || || |||||| || | ||| || ||| || Sbjct 5402 GATTCCCTCCTTATCCTGAATCTTCGCCTTCACATTATCAATGGTATCCGAGCTTTCCAC 5343 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || | |||||| || || || |||||||| |||| || ||||||||| Sbjct 5342 CTCCAAAGTAATCGTCTTTCCGGTTAATGTCTTAACGAAAATCTGCATT 5294 Score = 118 bits (130), Expect = 2e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || ||||||| || || || |||| |||| ||||| ||||||||||| | || Sbjct 5249 GATGTTGTAATCAGCCAAAGTGCGACCATCTTCCAGCTGTTTTCCAGCAAAGATAAGCCT 5190 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||||||||| ||||| |||||||| |||||||| || ||| ||| || ||| || | Sbjct 5189 CTGTTGATCTGGTGGGATTCCTTCCTTATCTTGGATCTTAGCTTTCACGTTATCAATGGT 5130 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || || ||||| | |||||| || || || || ||||| |||| || ||||| Sbjct 5129 GTCCGAGCTCTCGACTTCCAAAGTAATCGTCTTCCCGGTCAATGTCTTAACGAAAATCTG 5070 Query 192534 CAT 192536 ||| Sbjct 5069 CAT 5067 >seq31517 Length=16670 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | || | || ||||| | ||| | || || ||||| || ||| Sbjct 3252 ATACCACCTCTCAATCGAAGAACCAAATGAAGAGTGGATTCCTTCTGAATATTGTAGTCA 3193 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| | | |||| || | || ||||||||||||||||| ||||| || || ||| Sbjct 3192 GCAAGTGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATTAACCTCTGCTGGTCTGGT 3133 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| || || || ||||| ||| | ||||| || Sbjct 3132 GGGATACCCTCCTTATCTTGGATCTTTGCCTTAACATTGTCTATGGTGTCTGAACTCTCA 3073 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| ||||| || || || ||||| |||| || |||||||| Sbjct 3072 ACCTCCAAAGTGATGGTCTTTCCGGTCAATGTCTTAACGAAGATCTGCAT 3023 Score = 104 bits (114), Expect = 5e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 192345 CTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAA 192404 |||||| ||| || ||||| | || || || | || || | ||| || || ||||| Sbjct 2530 CTCTTTTTGGATGTTGTAATCGGCCAAAGTACGGCCGTCCTCGAGTTGCTTTCCGGCAAA 2471 Query 192405 GATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 ||| ||||| || ||||| || || |||||||| |||||||| ||||| || || || Sbjct 2470 GATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATTTTGGCCTTGACGTT 2411 Query 192465 AGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAAT 192524 | || | ||| || || || || ||||||||||| || ||||||| ||||| | Sbjct 2410 ATCAATTGTATCAGAGCTCTCGACCTCGAGAGTAATGGTCTTTCCAGTTAGGGTTTTCAC 2351 Query 192525 AAATATCTGCAT 192536 || |||||||| Sbjct 2350 GAAGATCTGCAT 2339 Score = 87.8 bits (96), Expect = 4e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | || | || || || | || | || || ||| ||||| || Sbjct 3024 ATACCACCTCTCAATCGAAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTATAGTCG 2965 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || | || || | ||||| || |||||||| || ||||| || || || Sbjct 2964 GCTAGAGTACGGCCGTCTTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGG 2905 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || || ||| || ||| || | ||| || ||| Sbjct 2904 GGAATACCTTCCTTATCTTGGATCTTGGCTTTCACGTTATCAATGGTATCCGAGCTTTCA 2845 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | ||| ||||| || ||||| | || |||| || || |||||| Sbjct 2844 ACTTCCAAAGTTATGGTCTTTCCAGTCAGGGTCTTAACGAAGATTTGCATT 2794 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| || |||| | || || | || || | || |||||||||||||| || ||| Sbjct 3660 ATATTGTAGTCAGCAAGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAACCTC 3601 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| ||||| || ||||| ||||| || || || || ||||| |||| | Sbjct 3600 TGCTGATCCGGTGGGATCCCTTCCTTATCCTGAATCTTTGCCTTGACATTGTCAATAGTA 3541 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || || || || | ||| ||||| || ||||| | || || | ||| |||||| Sbjct 3540 TCCGAACTCTCCACCTCCAAAGTGATGGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGC 3481 Query 192535 AT 192536 || Sbjct 3480 AT 3479 >seq40372 Length=8222 Score = 93.3 bits (102), Expect = 8e-14 Identities = 131/183 (72%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| |||||||||| || |||| | || | ||||| || || ||||| | | Sbjct 1304 GATGTTATAATCAGCTAGGGTTCTGCCGTCTCTTAGCTGTTTCCCGGCGAAGATGAGCCG 1363 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 |||||||| || || || |||||||| ||||| ||||| ||| |||||| || | Sbjct 1364 TTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCTTTGACATTATCGATTGT 1423 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || |||||| | |||||||||||||| ||||| | ||||| | || ||||| Sbjct 1424 ATCAGAACTCTCTACTCC-AGAGTAATGGTTTTTCCAGTAAGGGTTTTCACGAAGATCTG 1482 Query 192534 CAT 192536 ||| Sbjct 1483 CAT 1485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981218425451250