Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq156580 140 1e-27 seq106419 138 3e-27 seq73953 114 4e-20 seq49990 114 4e-20 seq27808 91.5 4e-13 >seq156580 Length=18256 Score = 140 bits (154), Expect = 1e-27 Identities = 225/317 (71%), Gaps = 10/317 (3%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| |||||||||||| || | || || || ||||||||||||||| ||||||||| Sbjct 12666 CATGATGTCTTCCATAGCTTTTACCAACCGCCGTTGAATATAACCAGTTTCAGATGTTTT 12607 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || |||||||| ||||| | | ||| |||||||| || || || | ||| | || Sbjct 12606 CACTGCAGTATCAATCAGACCTTCTCTACCTCCCATAGCGTGAAAAAAGAACTCCTGTGG 12547 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTC 302741 | | ||| | | | | ||| |||| || || ||||| || || || |||| || Sbjct 12546 TGTCAACCCTCGTAGATAAGAGTTCTCCACAAACCCACGGCTTTCAGGTCCGTAATCATC 12487 Query 302742 GAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCAT--AGCCGTATGGGATACGCTTTCCA 302799 ||| || || || || || |||| | ||| || |||| ||||| || ||||| || Sbjct 12486 ---CTTTGTGAAATGAGGAAGAGTCC-GATCT-ATGAAGCCATATGGAATTCGCTTCCCC 12432 Query 302800 TCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTG 302859 ||||||||||||||||||| || | | |||| || || ||||| | ||| || || Sbjct 12431 TCAACGTTCTGCTGTCCCACACAAGCAGTCATTTGAGATATATTAATGAAACTTCCTTTT 12372 Query 302860 GAGCCAGCATTTACCAT 302876 || || || | ||||| Sbjct 12371 GAACCTGCTGTAACCAT 12355 Score = 86.0 bits (94), Expect = 2e-11 Identities = 117/155 (75%), Gaps = 9/155 (6%) Strand=Plus/Minus Query 301815 AATTTCT-TCAATACGGGGAACACCACGGGTTACGTTAGACTTGG-ACGCAACACCAGCA 301872 ||||||| ||||| || ||||||||| | || || || ||| | || || |||||||| Sbjct 13434 AATTTCTCTCAAT-CGTGGAACACCAAGAGTCACATT---CTTCGCACTCA-CACCAGCA 13380 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAA-T 301931 | ||||| || || ||||| | ||| || | |||||||||||| ||||| |||| Sbjct 13379 TAATGGAAGGTGTTAAGAGTCATTTGTGTGGCTGGCTCACCAATGGACTGTGCGGCAACA 13320 Query 301932 CATACCAACCATTTCTCCTGGTGCTACAATAGACT 301966 ||| |||| ||||||||| ||||| || | |||| Sbjct 13319 CAT-CCAATCATTTCTCCAGGTGCAACGAGCGACT 13286 >seq106419 Length=70059 Score = 138 bits (152), Expect = 3e-27 Identities = 343/507 (68%), Gaps = 14/507 (3%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| || || | | ||| || | ||| | || || || | ||| || ||| Sbjct 23875 CTATCAAATCTCCCTGGTCTCAATAAAGCAGAGTCAAGAATGTCTGCACGGTTGGTAGCT 23816 Query 288910 GCCAATACAACAATAG-ATTCGGTTTGCTT-AAATCCATCCATACTTGTTAAAATTTGAT 288967 || | |||| |||| | | |||| ||| ||| |||||||| ||| |||| || | Sbjct 23815 GCAACCACAATAATACCAGT--GTTTCCTTCAAAGCCATCCATTTCTGTCAAAAGCTGGT 23758 Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttt 289027 | || |||||||| ||||||||||| | || || ||| ||| | || ||| ||| Sbjct 23757 TCAGGGTTTGTTCTCTTTCATCATT--ACCCCCTCCAAT-ACCAG--TCCCTC-TTTGCC 23704 Query 289028 tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 | ||||||||||||||||| |||| || | | ||| || | ||| | | || || Sbjct 23703 TCCCAACAGCATCAATTTCATCAACAAATACGATACAAGGGGCATTCTCCTTGGCCTTTT 23644 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 || | ||||| || | || || |||| ||||||| |||| || ||||| || ||| Sbjct 23643 TGAAAAGATCTCTAACTCTTGAGGCACCAACACCAACAAACATCTCAACAAACTCTGAAC 23584 Query 289148 CGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | || | | || | |||| ||| |||||| || || | ||| | || || |||||| Sbjct 23583 CTGA-AATAGAGAAAAATGGAACACCTGCTTCACCAGCAATAGCCTTGGCTAGCAGTGTC 23525 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 || || ||||| || || || | | ||||| |||||||| | | || ||| ||| Sbjct 23524 TTTCCGGTTCCTGGAGGACCAACAAGAAGAACACCCTTTGGAATCCTAGCACCAACAGCA 23465 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | | |||| || |||| | ||| ||||| | ||| | || | ||||| ||| Sbjct 23464 GTGAACCTCTCTGGCTTCTTCAGAAACTCTACGACCTCCATGAAATCCTGCTTTGCTTCA 23405 Query 289327 TC-ACATCCTGCTACATCAGCAAAAGT 289352 || ||| || || |||||| |||| || Sbjct 23404 TCTACA-CCAGCAACATCATCAAAGGT 23379 >seq73953 Length=35596 Score = 114 bits (126), Expect = 4e-20 Identities = 275/412 (67%), Gaps = 8/412 (2%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| || ||||| || || | |||||||| ||||||||||||||||||||| || Sbjct 24256 AAACCCGTCCATTTCCGTCAACAATTGATTAATAGTTTGTTCCCTTTCATCATTT---CC 24312 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 | | ||||| | | |||| | ||||| ||||| || || ||||| || | Sbjct 24313 GCCCCCAAGACCCG---CCCCTCTTTGCCTTCCAACCGCATCTATCTCATCAATAAACAC 24369 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118 | ||| || | || | | || | |||| | || || || | ||||| |||| Sbjct 24370 TATACAAGGTGCTTTCGATTTTGCCTTCTCAAAAAGATCCCTAACCCTAGATGCACCAAC 24429 Query 289119 ACCAACATACATTTCTACAAATTCAGAAG-CGGATACTTGAATGAATGTTACATTTGCTT 289177 ||| ||| | | ||| || || || |||| || | || ||| |||| ||| || | Sbjct 24430 ACCCACAAAAAGTTCAACGAACTCCGAAGCCGCACACGAGAA-AAATGGCACACCCGCCT 24488 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || || || ||||| |||| ||| ||||| || || || |||||||| | || ||| Sbjct 24489 CTCCGGCAACCGCCCTAGCCAAAAGGGTCTTTCCGGTCCCTGGTGGTCCGACCAAAAGAC 24548 Query 289238 CTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTA 289297 || ||||| | || || ||| || | | || || || ||| | || || || || | Sbjct 24549 ACCCTTTTGGGATCTTGGCTCCAAGAGCCGTGTACTTATCCGGGTTTTTCAAGAAATCAA 24608 Query 289298 CAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAA 289349 ||| ||| | ||||| | || |||| ||| ||| || || |||||||| Sbjct 24609 CAACTTCTTGTAGTTCCAACTTGGCCTGATCCGCTCCGGCCACGTCAGCAAA 24660 >seq49990 Length=8241 Score = 114 bits (126), Expect = 4e-20 Identities = 275/412 (67%), Gaps = 8/412 (2%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| || ||||| || || | |||||||| ||||||||||||||||||||| || Sbjct 4171 AAACCCGTCCATTTCCGTCAACAATTGATTAATAGTTTGTTCCCTTTCATCATTT---CC 4115 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 | | ||||| | | |||| | ||||| ||||| || || ||||| || | Sbjct 4114 GCCCCCAAGACCCG---CCCCTCTTTGCCTTCCAACCGCATCTATCTCATCAATAAACAC 4058 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118 | ||| || | || | | || | |||| | || || || | ||||| |||| Sbjct 4057 TATACAAGGTGCTTTCGATTTTGCCTTCTCAAAAAGATCCCTAACCCTAGATGCACCAAC 3998 Query 289119 ACCAACATACATTTCTACAAATTCAGAAG-CGGATACTTGAATGAATGTTACATTTGCTT 289177 ||| ||| | | ||| || || || |||| || | || ||| |||| ||| || | Sbjct 3997 ACCCACAAAAAGTTCAACGAACTCCGAAGCCGCACACGAGAA-AAATGGCACACCCGCCT 3939 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || || || ||||| |||| ||| ||||| || || || |||||||| | || ||| Sbjct 3938 CTCCGGCAACCGCCCTAGCCAAAAGGGTCTTTCCGGTCCCTGGTGGTCCGACCAAAAGAC 3879 Query 289238 CTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTA 289297 || ||||| | || || ||| || | | || || || ||| | || || || || | Sbjct 3878 ACCCTTTTGGGATCTTGGCTCCAAGAGCCGTGTACTTATCCGGGTTTTTCAAGAAATCAA 3819 Query 289298 CAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAA 289349 ||| ||| | ||||| | || |||| ||| ||| || || |||||||| Sbjct 3818 CAACTTCTTGTAGTTCCAACTTGGCCTGATCCGCTCCGGCCACGTCAGCAAA 3767 >seq27808 Length=19246 Score = 91.5 bits (100), Expect = 4e-13 Identities = 82/102 (80%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 219874 AGAAAAT-AAATGTACTTATTATCAATTACAAACACGTAGTGCTGATGAGTCTATGACTA 219932 |||||| |||||||||||||||||| | || ||||| ||||||||||| ||||||| | Sbjct 8057 AGAAAAGGAAATGTACTTATTATCAACTGCAGACACGGAGTGCTGATGAACCTATGACAA 8116 Query 219933 CGTTTGTAACTTGTATTCCTTGTGGTAATAGATGGAAGTGTT 219974 |||||||||| ||| | |||| |||| ||||||| || Sbjct 8117 CGTTTGTAACGTGTGTAAACTGTGATAATCATTGGAAGTTTT 8158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1466941479789775