Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_021802.1 Length=53664 Score E Sequences producing significant alignments: (Bits) Value seq150087 212 2e-50 >seq150087 Length=20667 Score = 212 bits (234), Expect = 2e-50 Identities = 372/539 (69%), Gaps = 2/539 (0%) Strand=Plus/Plus Query 24648 AACTAATCCAGATGAAACTACTTCCTAAGCAAGAACATGCTGTATATTATTTAAAAGACG 24707 |||||| | |||| | ||||||| ||| ||| ||||||| ||||| | ||||| Sbjct 10821 AACTAAATCGGATGGAGCTACTTCTTAAACAAAGTAATGCTGTTTATTACCTCAAAGATA 10880 Query 24708 ATAAAACTAAGGAGCTTCTTTACGGAGGCGCAGCTGGGGGCGGTAAATCTGCTCTCGGCT 24767 || || |||| | |||||||| || || || ||||| ||||| || ||| | |||| Sbjct 10881 ATTTTACACAGGATATACTTTACGGCGGGGCCGCAGGGGGTGGTAAGTCGGCTTTGGGCT 10940 Query 24768 GTTTGTGGTTAATAGAAATGTGTCAGAAATACCCTAAAAGCCGTTGGTTAATGGGTAG-A 24826 | || ||| | |||||| ||||| ||||| | || ||| | ||||| | | Sbjct 10941 GCTTATGGCTCATAGAACAATGTCAAGCCTACCCAGGCACTCGCTGGCTTATGGGGCGCA 11000 Query 24827 GCTAAGCTAAAGGCGCTTAAAGAAACAACACTAAATACATTCTTTGAATTAGCTGGTAAA 24886 || || ||||| | || |||||||| || || ||||| || || || || || | Sbjct 11001 GCAAACTTAAAG-CTCTAAAAGAAACTACGCTTAATACTTTTTTCGAGTTGGCCTCTGCT 11059 Query 24887 TTAGAGATAAGCAATCAATTTACGTTTAACGCTCAAACAAACATAATCTATTGGAATAAC 24946 ||| | ||| |||||| |||| | |||| |||| |||| ||| | ||||| ||| Sbjct 11060 TTAAAAATAGCCAATCAGTTTAGATACAACGGTCAAGACAACACCATCAACTGGAACAAC 11119 Query 24947 GGAAGTGAGATATTATTAAAAGATTTGTTCTTATATCCTAGTGATCCAAACTTTGATAGT 25006 || || | ||| | | || ||||| | | || || || || ||||| ||||| || Sbjct 11120 GGCAGCCAAATACTTCTTAAGGATTTAATGCTCTACCCCAGCGACCCAAATTTTGACAGC 11179 Query 25007 TTAGGTTCTTTAGAGATTTGCGGTGCTTTTATTGATGAGTGCAATCAAGTAGTGTTTAAA 25066 ||||| || | || ||| || ||||||||||| |||||||| || || | ||| Sbjct 11180 TTAGGCTCCCTTGAAATTACGGGCGCTTTTATTGACGAGTGCAACCAGGTTACATACAAA 11239 Query 25067 GCTTGGCAGATAGTAACCTCCAGATGTAGATATAAGCTTAATGAATTTGGTATTATACCT 25126 || ||||| | || | | || | |||||||||| || |||| ||||| ||||| Sbjct 11240 GCATGGCAAACTGTTAAGAGCCGAATTCGATATAAGCTAAACGAATGTGGTAAAATACCG 11299 Query 25127 AAAGTATTTGGTAGTTGTAACCCTGCAAAGAATTGGACGTATAAAGAGTTTTATAAGCC 25185 ||| || | |||| ||||||||| ||||| || ||| |||| ||||| ||||| || Sbjct 11300 AAAATACTAGGTACTTGTAACCCAGCAAAAAACTGGGTGTATGCCGAGTTCTATAAACC 11358 Score = 89.7 bits (98), Expect = 2e-13 Identities = 162/221 (73%), Gaps = 16/221 (7%) Strand=Plus/Plus Query 13742 AAAATAATGCAAATA--GCAAACCGTATT-TTAAG-AAAAAATGGTAAAA-TGATATTGA 13796 |||||| | |||||| || || || ||| ||||| |||||| || |||| || | ||| Sbjct 442 AAAATA-TACAAATATAGCTAATCGGATTCTTAAGGAAAAAACGGAAAAAATGGTTTTGT 500 Query 13797 -CAGCACAACAACCTTTTACAAATGAATTAATAAATAAAGCCGCTGTA--AATGTGCCTT 13853 | || || | || ||||||| | ||||||||| || ||| | ||| | || | Sbjct 501 TCCGCGCAGGA-CCATTTACAACTACTTTAATAAATG--GCGGCTATTCCAATATTCCGT 557 Query 13854 TTAATTATTCTATGATATGGGAGAAAGACCATTTTGCAAATGC-TTTAACCGCTAAAAAA 13912 | |||| |||||||| | ||||| |||||||| ||||| |||| ||||||||| Sbjct 558 TCTGTTATAGAATGATATGCTA-AAAGATCATTTTGCGAATGCCTTTATTAGCTAAAAAA 616 Query 13913 GCACCTTTAAATTATTATGAAGATGTTTTAGTTTTTAGTAA 13953 |||| | ||| |||||||||||||| | ||||||||||| Sbjct 617 GCAC-TGTAAGCTATTATGAAGATGTACT-GTTTTTAGTAA 655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171076278967900