Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq38170 136 4e-27 seq40372 129 5e-25 seq31517 127 2e-24 seq138370 113 4e-20 >seq38170 Length=7308 Score = 136 bits (150), Expect = 4e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| ||||| | ||||| || || || || || ||| || | Sbjct 6673 GATGCAGATCTTCGTGAAAACCCTAACTGAAAAAACCATAACCCTAGAGGTTGAATCCTC 6614 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| |||||||||||||||||||| || || || || || Sbjct 6613 TGACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCGGACCA 6554 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||| | ||||||||||| |||||||| || | |||| | | || || || || Sbjct 6553 ACAACGTCTCATCTTTGCCGGAAAACAGCTCGAAGGCGGCAGAACCCTATCCGACTACAA 6494 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || |||||||| || || ||| Sbjct 6493 CATCCAGAAGGAATCCACCCTCCAC 6469 >seq40372 Length=8222 Score = 129 bits (142), Expect = 5e-25 Identities = 154/206 (75%), Gaps = 5/206 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || ||||| ||||| || || ||||| | Sbjct 1485 ATGCAGATCTTCGTGAAAACCCTTACTGGAAAAACCATTACTCTGGA-GTAGAGAGTTCT 1427 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || ||| || ||||||||||||||||| || ||||| |||||| Sbjct 1426 GATACAATCGATAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAA 1367 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCG--AGAAACATGTCAGATTATA 24881 ||||| | ||||| |||||||||||||| | || || |||| | | | ||||||| Sbjct 1366 CAACGGCTCATCTTCGCCGGGAAACAGCT--AAGAGACGGCAGAACCCTAGCTGATTATA 1309 Query 24882 ACATTCAAAAGGAATCGACACTACAC 24907 |||| || |||||||| || || ||| Sbjct 1308 ACATCCAGAAGGAATCAACTCTTCAC 1283 Score = 107 bits (118), Expect = 2e-18 Identities = 165/228 (72%), Gaps = 7/228 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||| | |||| || ||||| |||||| | || || ||| | Sbjct 1029 ATGCAGATCTTCGTGAAA-CATTAACGGGAAAAAC-ATTACGTTGGAGGTTGAAAGTTCT 972 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| || || || || ||||| || ||||| || || || ||||| ||||| Sbjct 971 GATACAATATAAC--GTGAAGGCCAAGATTCAGGACAAGGAGGGTATTCCTCCAGATCAG 914 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| ||||| |||||| |||| ||| | || ||| | | ||||| || Sbjct 913 CAGCGTTTGATCTTCGCCGGCAAACAGTTGGAAGATGC-AG-AACCTAGCGGATTACAAT 856 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 | |||||||||||| || | || |||| || ||||| | |||||| Sbjct 855 A-TCAAAAGGAATCTACGTTGCATCTGGTTCTGAGATTGAGGGGAGGC 809 >seq31517 Length=16670 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| ||||| || || || ||||| ||||| || || | | Sbjct 2338 GATGCAGATCTTCGTGAAAACCCTAACTGGAAAGACCATTACTCTCGAGGTCGAGAGCTC 2397 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 || ||| | || |||| || | ||| |||||||| || |||||||| ||||| |||| Sbjct 2398 TGATACAATTGATAACGTCAAGGCCAAA-ATCCAAGATAAGGAAGGAATTCCTCCAGATC 2456 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | ||| | |||||||||||||| || || || ||||| | | || | ||||| | Sbjct 2457 AGCAAAGATTGATCTTTGCCGGAAAGCAACTCGAGGACGGCCGTACTTTGGCCGATTACA 2516 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||| ||||| || || ||||| ||| | || | ||||| | ||||| Sbjct 2517 ACATCCAAAAAGAGTCCACACTCCACCTTGTCCTCAGATTGAGAGGAGG 2565 Score = 125 bits (138), Expect = 6e-24 Identities = 164/221 (74%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| ||| | || || || || || || | || || || | | Sbjct 3251 ATGCAGATCTTTGTTAAGACGTTGACTGGAAAGACAATCACTTTGGAGGTTGAGAGCTCT 3310 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| ||| | ||||||||||||||| ||||| || || || ||||| Sbjct 3311 GATACTATCGATAACGTTAAGGC-AAAGATCCAAGACAAGGAAGGGATCCCACCAGATCA 3369 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTAT 24880 || | ||||||||||| || || ||||| |||||| ||| | | || | || || Sbjct 3370 GCAGAGATTGATCTTTGCAGGTAAGCAGCTCGAGGATGGTCG-TACGCTTG-CTGACTAC 3427 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATT 24921 |||||||| ||||||||||| ||||||||||| | ||||| Sbjct 3428 AACATTCAGAAGGAATCGACTCTACACTTGGTTCTTCGATT 3468 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| |||| || || || || || || || || | ||||| ||| | | Sbjct 2795 ATGCAAATCTTCGTTAAGACCCTGACTGGAAAGACCATAACTTTGGAAGTTGAAAGCTCG 2854 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| ||||||||||| || ||||| || || || || || Sbjct 2855 GATACCATTGATAACGTGAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAG 2914 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||||||| |||||||| || || | | | | || |||||| Sbjct 2915 CAGAGGTTGATCTTTGCCGGCAAACAGCTTGAAGACGGCCGTACTCTAGCCGACTATAAC 2974 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||| || || |||||||| | |||||| | || || Sbjct 2975 ATCCAGAAGGAATCAACCCTTCACTTGGTTCTTCGATTGAGAGGTGG 3021 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| | ||||| || ||||| || || || || | ||||| || | Sbjct 2566 GATGCAAATCTTCGTCAAAACCCTCACCGGAAAGACAATCACCTTGGAAGTCGAGAGTTC 2625 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| |||||||| ||||| |||||||| ||||| || || Sbjct 2626 TGACACTATCGATAACGTGAAAGCCAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCA 2685 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||| ||||| || || || || || | | | | ||||| || Sbjct 2686 GCAGAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGTCGTACTCTAGCCGATTACAA 2745 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||||||||| || |||||||| | | ||| | ||||| Sbjct 2746 TATCCAAAAGGAATCGACCCTTCACTTGGTCCTCAGGTTGAGAGGAGG 2793 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| || | ||||| || || || || | || || || | Sbjct 3023 ATGCAGATCTTCGTTAAGACATTGACCGGAAAGACCATCACTTTGGAGGTTGAGAGTTCA 3082 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| |||| | || || |||||||||||| || || || || || || || || Sbjct 3083 GACACCATAGACAATGTTAAGGCAAAGATCCAAGATAAGGAGGGTATCCCACCAGACCAG 3142 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGA-GAAACATGTCAGATTATAA 24882 || | || |||||||| || || ||||| || ||| | || || || | || || || Sbjct 3143 CAGAGGTTAATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACACTTG-CTGACTACAA 3201 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||||||| || || || ||||| | |||||| | || || Sbjct 3202 TATTCAGAAGGAATCCACTCTTCATTTGGTTCTTCGATTGAGAGGTGG 3249 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || | || || || | Sbjct 3478 GATGCAGATCTTTGTGAAGACTCTGACTGGGAAGACCATCACTTTGGAGGTGGAGAGTTC 3537 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || |||||| || || || ||||| || || || ||||| Sbjct 3538 GGATACTATTGACAATGTCAAGGCAAAGATTCAGGATAAGGAAGGGATCCCACCGGATCA 3597 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||| || || ||||| ||||| | | | | | || || || Sbjct 3598 GCAGAGGTTGATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGTACCCTTGCTGACTACAA 3657 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| |||||||| || || |||||||| Sbjct 3658 TATTCAGAAGGAATCAACCCTTCACTTGGT 3687 >seq138370 Length=13449 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || |||| || || ||||| ||||| || || | ||||| ||| | | Sbjct 4838 GATGCAGATTTTCGTTAAGACCCTCACCGGAAAAACCATCACTTTGGAAGTTGAAAGCTC 4897 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| |||||||||||||||||||| || || || || || Sbjct 4898 TGACACCATTGATAACGTCAAAGCTAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCA 4957 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | | || || ||||| ||||| || ||||| ||| | || | ||||| || Sbjct 4958 ACAAAGGCTCATTTTCGCCGGAAAACAACTCGAGGACGGCCGAACCCTGGCTGATTACAA 5017 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || || || || || || || ||||| Sbjct 5018 CATCCAGAAAGAGTCCACTCTCCATTTGGT 5047 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || |||| || | ||||| || || ||||| | ||||| || | | Sbjct 5067 ATGCAGATTTTCGTTAAGACATTGACCGGGAAGACGATTACTTTGGAAGTCGAGAGCTCG 5126 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||||||||| || |||||||| || || |||||| Sbjct 5127 GACACCATTGATAACGTGAAAGCTAAGATCCAAGATAAGGAAGGAATCCCACCAGATCAA 5186 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || ||||||||||| ||| | | || | ||||| ||| Sbjct 5187 CAGAGGCTTATCTTTGCTGGAAAACAGCTGGAAGATGGTCGCACTTTGGCTGATTACAAC 5246 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || |||||||| || || ||| | ||| Sbjct 5247 ATCCAGAAGGAATCTACCCTCCACCTTGTG 5276 Score = 105 bits (116), Expect = 6e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 24696 TTGATAC-GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTA 24754 || |||| |||||| |||||| |||| || || ||||| || || || || || ||||| Sbjct 4602 TTAATACAGATGCAAATCTTTGTTAAGACCCTCACCGGAAAGACAATCACTCTTGAAGTC 4661 Query 24755 GAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCT 24814 || |||||||| |||| | || || |||||||||||||||||||| || || Sbjct 4662 GAGAGTTCCGACACAATAGACAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATTCCA 4721 Query 24815 CCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCA 24874 || || || ||| | | ||||||||||| || ||||| || || | | | | Sbjct 4722 CCAGACCAGCAAAGACTTATCTTTGCCGGAAAGCAGCTTGAAGACGGCCGTACTTTAGCC 4781 Query 24875 GATTATAACATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||| || || ||||| ||||| || || || |||| Sbjct 4782 GATTACAATATCCAAAAAGAATCCACCCTTCATCTTG 4818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448443446601000