Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq31517 131 1e-25 seq138370 104 2e-17 seq38170 100 2e-16 seq40372 84.2 1e-11 >seq31517 Length=16670 Score = 131 bits (144), Expect = 1e-25 Identities = 169/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| |||||||| ||||||| ||||| ||| ||||| || || || || || | Sbjct 2795 TTCCTCCTCTCAACCTGAGGACCAAGTGAAGGGTCGATTCCTTTTGGATATTGTAATCGG 2736 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 ||| | || | || || |||||||||||||||||||||| || ||||||||| | | Sbjct 2735 CTAGAGTACGACCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAG 2676 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCC 34924 | | || |||||||| | || || ||| || | ||||||| ||| | Sbjct 2675 GGATTCCTTCCTTGTCCTGGATCTTGGCTTTCAC----GTTATCGATAGTGTCAGAACTC 2620 Query 34925 TCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | ||| || |||||||| |||||||| || || ||||| ||||| Sbjct 2619 TCGACTTCCAAGGTGATTGTCTTTCCGGTGAGGGTTTTGACGAAGATTTGCAT 2567 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| ||||| || ||||| ||||| | ||| ||| || || ||||| || || | Sbjct 2565 CCTCCTCTCAATCTGAGGACAAGGTGGAGTGTGGACTCTTTTTGGATGTTGTAATCGGCC 2506 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | || | || || |||||||||||||| ||||||| || |||||| ||| | || Sbjct 2505 AAAGTACGGCCGTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTTTGCTGATCTGGAGGA 2446 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || ||||| || | ||||| |||||| | || | ||| | |||||| Sbjct 2445 ATTCCTTCCTTATCTTGGATTTTGGCCTTGACGTTATCAATTGTATCAGAGCTCTCGACC 2386 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || ||||||||||| || ||||| || || ||||||||||| Sbjct 2385 TCGAGAGTAATGGTCTTTCCAGTTAGGGTTTTCACGAAGATCTGCAT 2339 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || ||||| | || |||| ||||| ||| |||||||| ||||||||||| | | Sbjct 3021 CCACCTCTCAATCGAAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTATAGTCGGCT 2962 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || | || || || || || ||||| ||||||| | ||||||||| | || Sbjct 2961 AGAGTACGGCCGTCTTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 2902 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || ||||| || | || || ||| ||| | || | || | || || Sbjct 2901 ATACCTTCCTTATCTTGGATCTTGGCTTTCACGTTATCAATGGTATCCGAGCTTTCAACT 2842 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | |||||||||||||| || |||||||| || ||||| ||||| Sbjct 2841 TCCAAAGTTATGGTCTTTCCAGTCAGGGTCTTAACGAAGATTTGCAT 2795 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||||||||| ||||| | || | || |||| || || ||||| || || ||| Sbjct 3441 TCCTTCTGAATGTTGTAGTCAGCAAGCGTACGACCATCCTCGAGCTGCTTACCTGCAAAG 3382 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||||| ||| | || | ||| |||||||| | || ||| || ||| Sbjct 3381 ATCAATCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCTTGGATCTTTGCCTTAACGT-- 3324 Query 34907 GCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962 ||||||| ||| | ||| || || | || || |||||||| || | ||||| Sbjct 3323 --TATCGATAGTATCAGAGCTCTCAACCTCCAAAGTGATTGTCTTTCCAGTCAACGTCTT 3266 Query 34963 TACAAAGATCTGCAT 34977 |||||||||||||| Sbjct 3265 AACAAAGATCTGCAT 3251 >seq138370 Length=13449 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| || || || || || || |||| |||| || || || || || || || | | Sbjct 4837 CCTCCTCTTAATCTGAGAACAAGATGAAGGGTGGATTCTTTTTGGATATTGTAATCGGCT 4778 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | || | || || || ||||||||||| ||||| |||| |||||||||| | || Sbjct 4777 AAAGTACGGCCGTCTTCAAGCTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGA 4718 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || ||||| | || || |||||| |||| | || |||||| Sbjct 4717 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTGTCTATTGTGTCGGAACTCTCGACT 4658 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| ||||||||||| |||||||| ||||| Sbjct 4657 TCAAGAGTGATTGTCTTTCCGGTGAGGGTCTTAACAAAGATTTGCAT 4611 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| || | ||| ||| ||||| ||||| || || | ||| | || | || Sbjct 5050 AGGACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCCAGGGTTCGGCCGTCC 4991 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| ||||||||||| || || | ||| |||||| | || | || || ||||| Sbjct 4990 TCGAGTTGTTTTCCGGCGAAAATGAGCCTTTGTTGGTCTGGGGGGATGCCTTCTTTGTCT 4931 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||||| | || | ||| | || || || | || ||||| Sbjct 4930 TGGATCTTAGCTTTGACGTTATCAATGGTGTCAGAGCTTTCAACTTCCAAAGTGATGGTT 4871 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||||||||| || || |||||||| Sbjct 4870 TTTCCGGTGAGGGTCTTAACGAAAATCTGCAT 4839 >seq38170 Length=7308 Score = 100 bits (110), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | |||| |||||||| ||||| ||||| |||||| | | | | Sbjct 6461 AGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTTCTGCCGCCT 6520 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || |||||||| ||||| || ||||| ||||| | || | || || ||||| Sbjct 6521 TCGAGCTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCCGGTGGGATACCTTCTTTGTCT 6580 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || |||||| || | ||||| ||| || || || || | |||||| Sbjct 6581 TGGATCTTGGCTTTGAC--AT--TGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTAT 6636 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||| | || ||||| || || ||||||||||| Sbjct 6637 GGTTTTTTCAGTTAGGGTTTTCACGAAGATCTGCAT 6672 >seq40372 Length=8222 Score = 84.2 bits (92), Expect = 1e-11 Identities = 154/219 (70%), Gaps = 15/219 (7%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGG---CTGCGCTCA 34822 ||||| ||||||| || |||||||| |||||||| || | |||| |||| || Sbjct 1275 AGGACGAGGTGAAGAGTTGATTCCTTCTGGATGTTATAATCAGCTAGGGTTCTGCCGTC- 1333 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || | || || || ||||||||||| || ||||| || ||| | || | || || ||| Sbjct 1334 TCTT--AGCTGTTTCCCGGCGAAGATGAGCCGTTGTTGATCTGGAGGAATGCCTTCTTTG 1391 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGT 34938 || | ||||| |||||| || ||||||| ||| ||| || || | || Sbjct 1392 TCTTGGATTTTGGCTTTGAC--AT--TATCGATTGTATCAGAACTCTCTAC-TCCAGAGT 1446 Query 34939 TATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| || ||||| || || ||||||||||| Sbjct 1447 AATGGTTTTTCCAGTAAGGGTTTTCACGAAGATCTGCAT 1485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324666417307925