Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq138370 102 1e-16 seq40372 100 4e-16 seq31517 84.2 3e-11 >seq138370 Length=13449 Score = 102 bits (112), Expect = 1e-16 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || ||||| ||||| ||| |||| || || | || Sbjct 4612 TGCAAATCTTTGTTAAGACCCTCACCGGAAAGACAATCACTCTTGAAGTCGAGAGTTCCG 4671 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || || || || || ||| ||||||||||||||||| || || | Sbjct 4672 ACACAATAGACAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATTCCACCAGACCAGC 4731 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| || ||||| || || || | || || | || ||| | ||||| |||| Sbjct 4732 AAAGACTTATCTTTGCCGGAAAGCAGCTTGAAGACGGCCGTACTTTAGCCGATTACAATA 4791 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||||||||| || | ||| | || | ||||||||||||| Sbjct 4792 TCCAAAAAGAATCCACCCTTCATCTTGTTCTCAGATTAAGAGGAGG 4837 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || | || |||||||| || ||| | || || ||| | Sbjct 4840 TGCAGATTTTCGTTAAGACCCTCACCGGAAAAACCATCACTTTGGAAGTTGAAAGCTCTG 4899 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | || || ||| ||| || ||| ||||||||||| || || || |||| Sbjct 4900 ACACCATTGATAACGTCAAAGCTAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAAC 4959 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| |||||||| || || |||||| | || || |||| | | ||||| || | Sbjct 4960 AAAGGCTCATTTTCGCCGGAAAACAACTCGAGGACGGCCGAACCCTGGCTGATTACAACA 5019 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || ||||| || ||| ||||||| || Sbjct 5020 TCCAGAAAGAGTCCACTCTCCATTTGGT 5047 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || |||||||| ||||| || |||||| | || || ||| | Sbjct 5296 TGCAGATTTTCGTTAAGACATTAACCGGAAAGACGATTACTTTGGAGGTGGAAAGCTCGG 5355 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || || || || ||| || || || ||||| || || | Sbjct 5356 ATACCATTGATAATGTGAAGGCGAAGATTCAGGATAAGGAGGGAATCCCACCGGACCAGC 5415 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || ||||| ||||||||||| || ||| || || | | |||||||||| Sbjct 5416 AGAGGTTGATCTTTGCTGGTAAACAATTGGAAGATGGGAGGACACTTGCTGATTATAATA 5475 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | || ||||| || ||| | ||| Sbjct 5476 TCCAGAAAGAGTCCACTCTTCAT 5498 >seq40372 Length=8222 Score = 100 bits (110), Expect = 4e-16 Identities = 141/197 (72%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| | || |||||||| |||||| | || ||||| | | Sbjct 1484 TGCAGATCTTCGTGAAAACCCTTACTGGAAAAACCATTACTCTGGA-GTAGAGAGTTCTG 1426 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| ||| ||||| ||| |||||||||||||| || ||||||| Sbjct 1425 ATACAATCGATAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAAC 1366 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| || || || ||||| || || ||||| || | |||||||| | Sbjct 1365 AACGGCTCATCTTCGCCGGGAAACAGCTAAGAGACGGCAGAACCCTAGCTGATTATAACA 1306 Query 146212 TACAAAAAGAATCGACT 146228 | || || ||||| ||| Sbjct 1305 TCCAGAAGGAATCAACT 1289 >seq31517 Length=16670 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || || || ||||| ||||| ||| | || || || | Sbjct 3252 TGCAGATCTTTGTTAAGACGTTGACTGGAAAGACAATCACTTTGGAGGTTGAGAGCTCTG 3311 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| | || || || || || ||| || ||||| || ||||| ||||| | Sbjct 3312 ATACTATCGATAACGTTAAGGCAAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAGC 3371 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | || ||||||||||| || | || ||| | | ||| | | || || || | Sbjct 3372 AGAGATTGATCTTTGCAGGTAAGCAGCTCGAGGATGGTCGTACGCTTGCTGACTACAACA 3431 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || ||||||||| | || || || | ||||||||||| || Sbjct 3432 TTCAGAAGGAATCGACTCTACACTTGGTTCTTCGATTAAGAGGTGG 3477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783625362789000