Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_023614.1 Length=43153 Score E Sequences producing significant alignments: (Bits) Value seq150087 288 3e-73 >seq150087 Length=20667 Score = 288 bits (318), Expect = 3e-73 Identities = 902/1376 (66%), Gaps = 37/1376 (3%) Strand=Plus/Plus Query 32043 CTACCAGAACGCTGCAGTTAATCACATCATGGAAAAATCGCATTGTGCTTTATTTCTGGA 32102 ||||||| | |||| |||| ||||| |||||||| |||| | || | | || || Sbjct 4434 CTACCAGCATACTGCTGTTAGCCACATAATGGAAAATACGCACGGGGCGCTGCTGCTTGA 4493 Query 32103 CATGGGTTTAGGGAAAACGGTTTCAACTCTGACGGCCATAAATAAATTAATGTTTGAGGA 32162 ||||| ||||| |||||||| || || || ||||| || || ||| |||| | ||| || Sbjct 4494 AATGGGCTTAGGCAAAACGGTGTCGACCCTTACGGCTATCAACAAACTAATTTATGAAGA 4553 Query 32163 CTTGGACATATCGTCCGTATTAGTTGTCGCACCTAAAAGGGTGGCCGAGAGTGTTTGGGG 32222 |||| ||| |||| | | | || ||||| |||| || || ||||| ||| | Sbjct 4554 GCTGGAAATAAACGCCGTGCTTATCATAGCCCCTAAGCGGGTAGCTGAAAGTGTGTGGAG 4613 Query 32223 TGCCGAGACTCAAAAATGGGCACACCTCAACCATTTAAAAGTGG-TATTAATCGCAG-GG 32280 ||| |||| || |||| |||||| | ||| | | | ||| || | || Sbjct 4614 TGCTGAGATAGGCAAGTGGGAACACCTTAGCCACCT----GCGCATATCAAAGATACTGG 4669 Query 32281 ACAGCGAAA--CAACGACGAGAGGCCCT--CAGCAAAAAAGGGGATATTTATATGCTC-G 32335 || ||| | || || | ||||| | ||||| | || | || | | | Sbjct 4670 GCAACGAGAAGCAGCGTAAGGCTGCCCTGCCGGCAAACCGGCAGACGTGTACACCATAAG 4729 Query 32336 GTCGGGACAATGTATCTTGGTTGTGCGGACAATATGGGGGTTCGATGTTACCTTTTGATA 32395 | || || || || | ||| | || ||| | ||| || | || ||||||| Sbjct 4730 GCCGCGATAACGTGGCGTGGCTTTGTTCACAGTTTGGCGGCACCCGCACCCCGTTTGATA 4789 Query 32396 TG-TTGGTACTGGACGAAAGTTCGAGTTTTAAGAATCCGAAATCAATCCGTTTT-AAATC 32453 || ||| | | |||||| ||||| || || ||| | || | || || ||| | Sbjct 4790 TGCTTGCTCATTGACGAACTAAGCAGTTTCAA-AACCCGCAGTCGGTACGCCTTCAAAGC 4848 Query 32454 TTTACGAGGGGTACAACCATCCTTTAAAAGAGTGGTCGCACTGACGGGAACACCCGCACC 32513 || | ||| || || ||||||| | || |||| || ||||| || || || || Sbjct 4849 ATTGAAGGCGGTGCAGCCGTCCTTTAGCCGCGTTGTCGGCCTTACGGGTACTCCTGCGCC 4908 Query 32514 AAATAGTTTAATGGACTTATG---GCCTCAAATATATTTGTTGGACAGAGGGGAACGCCT 32570 ||| | | || ||||| || | |||||||||||| | ||| | || | | | || Sbjct 4909 TAATGGCCTCATAGACTTGTGTTGGAGCCAAATATATTTGCTTGACCGGGGCGCAAGGCT 4968 Query 32571 GGGTAAATACATTACCAGATTCAGGGAGGAATATTTCCGCCCCGG--TAAACGAAACGGT 32628 ||| || | || || | | |||| || ||| |||||| ||| || ||||| Sbjct 4969 GGGCAAGTTTATCACTACCTATCGGGAAACGTACTTCAGCCCCGCCATAAGCGTAACGGC 5028 Query 32629 GCCATTGTGTATAAATATGATATTACGGACTCAGGCGAACAAAGAATCCACGACGCAATC 32688 | || ||| | ||| | || ||| |||||||| || |||| | || || Sbjct 5029 TCGATAACGTACAGCTATAAACTTGAGGAGTCAGGCGAGCAGCAAATCTATGATAAGATA 5088 Query 32689 GGGGATATTTGTATGTCCATGAAAGCAAAAGATTATTTGGATTTACCAGGCCGTATCGAT 32748 || |||||||||||| |||||| || ||||||||||| |||||||| | |||||| | Sbjct 5089 GGCGATATTTGTATGAGCATGAAGGCTAAAGATTATTTAGATTTACCCGAACGTATCAAC 5148 Query 32749 AATATTATCAATATCCCGATGCCTCTGGACATTGCCGAAA-AATACAAAGAATTTGAGAG 32807 || || | |||| |||||| ||| | || ||| ||||||| || || |||| Sbjct 5149 AACGTTGTGCTTATCGATATGCCTGCAGACCT-GCAGAAGCAATACAACGACTTCGAGAA 5207 Query 32808 GGACCAAGTATTGCAACTTTTCGAGGGTCAAGATTTAGAGGACGGAATATCGGCCGTAAA 32867 ||| || || || | || | | | | | || | | |||||| ||| | || Sbjct 5208 GGAACAGGTTATGAACCTGGTAAGCGCTGAGGGCGACGACAAAGAAATATCTGCCCTGAA 5267 Query 32868 TGCTGCGGCACTATCAAATAAATTATTACAGTTTGCAAACGGTGCGGTTTACGATGCCGA 32927 ||||||||| | ||||| || ||||| |||||||| || || || | || || ||| Sbjct 5268 TGCTGCGGCGTTGTCAAACAAGTTATTGCAGTTTGCCAATGGCGCTATGTATGA---CGA 5324 Query 32928 GAAAAACGT---CCACCAGATACACGATTTAAAAATCGATGCTTTAAAAGAGATAATCGA 32984 ||| | || |||| || ||||||||||||| | |||||| |||| | ||||| Sbjct 5325 GAACAGAGTATACCACGAGGTACACGATTTAAAGCTACTGGCTTTAGAAGAACTTATCGA 5384 Query 32985 GGACGCCAACGGAAAACCTATTTTAATTGCCTGGACATATCGTTCGGATGTTGCACGCCT 33044 | |||||||| | || | | || || ||||| || | || | || | Sbjct 5385 AGCGGCCAACGGCCACCCGGTGCTTATCGCATGGACGTACAGGCACGAC----CGCGACA 5440 Query 33045 GAAGGA---AGCA-CTaaaaaaaTACAAACCCAGAGAATTAAAAACCGATCAGGACATAC 33100 ||| | || | ||||| || ||||| || | ||| | ||||| |||||||| ||| Sbjct 5441 GAATGCTCGAGAAGCTAAAGAAGTACAAGCCGAAGGAACTTAAAACGGATCAGGATATAA 5500 Query 33101 GAGATTGGAACGCTGGAAAAATTCAGGTTTTAATGATGCACCCCGCGTCTGGTGGACATG 33160 || |||||||| || || || || ||| | |||||||||||||| ||||| || |||| Sbjct 5501 ACGACTGGAACGCCGGGAAGATACAAGTTATGATGATGCACCCCGCTTCTGGAGGGCATG 5560 Query 33161 GTTTGAATTTACAGGCAGGAGGTAACAATATTATTTGGTTCGGTCAAACTTGGTCGTTGG 33220 | | || || |||||||| || || | || | ||||| || || || ||| || | Sbjct 5561 GCCTTAACTTGCAGGCAGGCGGCAATATAATCGTGTGGTTTGGGCAGACGTGGAGTTTAG 5620 Query 33221 AATTAGAGCAACAATTTAACGCCAGATTAGACCGCCAGGGACAACAGAATGTCGTCGTAA 33280 || | ||||| ||||| ||||| || | ||||| ||||| || | || | || ||| Sbjct 5621 AACTCGAGCAGCAATTCAACGCGAGGCTTGACCGTCAGGGGCAGAAAAACGCTGTTGTAG 5680 Query 33281 TAAACAAACTATGTATTGAGGGTACAATCGACCTCGACGTAATAAAAGCACAGGA-ACGT 33339 | ||||| || | | || ||||| ||| || ||| | ||||||||||| ||| Sbjct 5681 TGAACAAGCTGGCAGTGGTCGGCACAATGGACGAGGATGTACTGAAAGCACAGGAGACGA 5740 Query 33340 AAGGCAAAAGGTCAGGACGGATTAATGGAAGCCGTAAAAGCTAAAATCGAAAAATA 33395 |||| || | || || | | ||||| ||||| ||||||||||| | ||||| Sbjct 5741 AAGGTAATA-ACCAAAACCGGCTTATGGATGCCGTGAAAGCTAAAATTAATAAATA 5795 Score = 159 bits (176), Expect = 1e-34 Identities = 489/737 (66%), Gaps = 28/737 (4%) Strand=Plus/Plus Query 29532 ATTAAAGACGTTGGGGGTTATGTTGGTGGATATTTACGAAATGGTCGTCGTAAACCTGAG 29591 || |||||||| || |||| ||| || || || || | |||| ||||| | ||| Sbjct 1369 ATAAAAGACGTAGGCGGTTTTGTGGGGGGCTACCTAAGGGGTGGTAAGCGTAAGCATGAC 1428 Query 29592 AATGTAGTACATAGGCAGTTAATGACTCTGGATATTGATTTTGCGCACATTGATTTTTGG 29651 | || ||||| | ||| | | || || ||||| ||||| ||||| | ||||||||| Sbjct 1429 ACCGTTGTACACCGCCAGCTGCTTACCCTCGATATAGATTTCGCGCATAAAGATTTTTGG 1488 Query 29652 GACGATTTTTGTCT-GCAATTTGATAACGCGGCAATTCTACACGCCACACATAAACACTC 29710 | || || || ||||| || ||| || | || |||||||| ||||| || | Sbjct 1489 CAGGACTTCACACTCGCAATG-GACTGCGCCGCCGTACTGCACGCCACGCATAAGCATTG 1547 Query 29711 AGACGAAAGTCCTCGATACCGTTTAATCATGCCG-TTATCGAGAGAGGCAACACCAGACG 29769 || | | || |||||||| | ||||| ||| ||| | | || || || |||| Sbjct 1548 CGAAGCATCACCGCGATACCGCCTTATCATACCGCTTAACC-GTGAATGTACGCCCGACG 1606 Query 29770 AATATGTGGCAGTTTCTCGTAAAATTGCGGGTACTTTAGGTATTGAACTTTTCGACAATA 29829 |||||||||||| |||||| |||| || |||||||||||| || |||||||| | Sbjct 1607 AATATGTGGCAGCAGGCCGTAAAGTTGCAGGCGATTTAGGTATTGACCTGTTCGACAACA 1666 Query 29830 CCACATTTGAAACAAACCGATTAATGTTCTGGCCGTCGTCTCCAAAAGACGTTGAGTATT 29889 | || || || | ||||| || ||||| ||||| || |||| || || | ||||||| Sbjct 1667 CTACGTTCGAGCCTAACCGCTTGATGTTTTGGCCTTCTACTCCTAAGGATATGGAGTATT 1726 Query 29890 ATTGTGAGGTACAGGACGGAATCTG-GGTCGATGTTGACGCAGTTTTGGGTACTTATATT 29948 | | | | || | | | ||| || || ||||||| || ||| ||| ||| Sbjct 1727 ACTTTAAAACGCA-GTCAGGCCCTGCAGTAGACGTTGACGAGGTGCTGGCTACATATGCC 1785 Query 29949 GACTGGA-AGGATTCG--AGTTTATGGCCTACT-GCGGACAGAAAAATACAGG--AGGTA 30002 ||||||| | | | | || | ||||||||| || ||| | || || Sbjct 1786 GACTGGACTGCAATAGGCAGCCTGTGGCCTACTCGCAACCAGTTCGACCATGGTCGGGCG 1845 Query 30003 AACGGATTTGTTGAAAAACAGGAA-GATCCAGAAAATAAAA-AAGGAATCGT-CGGGGCT 30059 ||| || || |||||| ||||| |||| |||| |||| ||||| || | | Sbjct 1846 CACG-------CGATAAGCAGGAACGATCCCGAAACGAAAACAAGGTATCGTATGGCGGT 1898 Query 30060 TTTTG--TAGAGCCTA-CACCGTTACTGAGGCAATATCTGAATTTTTAAAAGATATGTAC 30116 | || ||| || || ||| | |||||||| || || |||| |||| || |||| Sbjct 1899 TCGTGATTAGGGCGTACCACATTGACTGAGGCCATTACTAAATTCTTAAGTGAGGAGTAC 1958 Query 30117 ACCCCAACC---ACGGACGGACGATTTACCTACTCCAAAGGGACAACCGCGTCGGGACTG 30173 || ||| | || || | || || || ||| | ||||| || |||| || Sbjct 1959 CTGCCTACCGATATTGAGAACCGTTACACGTATTCTAAAAGTACAACGGCTGCGGGGCTT 2018 Query 30174 ATTCTCTACGACGATAAATTCGCATACTCACACCACGGGACTGATCCGTGCAGTGGTAAA 30233 ||| ||||||| ||||| || || | ||| |||||||| || || |||||||| || || Sbjct 2019 ATTGTCTACGATGATAAGTTTGCCTTCTCGCACCACGGCACCGACCCGTGCAGCGGCAAG 2078 Query 30234 CTATGTAATGCCTTCGA 30250 || | || || ||||| Sbjct 2079 CTGTCAAACGCTTTCGA 2095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137544358477250