Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq138370 188 1e-42 seq31517 181 2e-40 seq40372 149 1e-30 >seq138370 Length=13449 Score = 188 bits (208), Expect = 1e-42 Identities = 180/228 (79%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | || || || | ||| || |||||||| ||||| || || ||||||| Sbjct 5293 CCTCCCCTTAGCCGAAGCACAAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCAGCC 5234 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | ||| ||||| || ||||||||||||||||| || || ||||||||||| || Sbjct 5233 AAAGTGCGACCATCTTCCAGCTGTTTTCCAGCAAAGATAAGCCTCTGTTGATCTGGTGGG 5174 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 ||||||||||||||||| ||||| ||||| || || ||||| || || || | || || Sbjct 5173 ATTCCTTCCTTATCTTGGATCTTAGCTTTCACGTTATCAATGGTGTCCG-AGCTCTCGAC 5115 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| |||||||| || ||||| ||||| || || |||||||| Sbjct 5114 TTCCAAAGTAATCGTCTTCCCGGTCAATGTCTTAACGAAAATCTGCAT 5067 Score = 168 bits (186), Expect = 1e-36 Identities = 177/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 82579 ACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAAT 82638 ||| ||| || | | ||| ||||| | || ||||| || |||||||| |||||||||| Sbjct 5526 ACCCACCACCACGAAGACGAAGAACAAGATGAAGAGTGGACTCTTTCTGGATATTATAAT 5467 Query 82639 CAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTG 82698 ||| || | || || ||||| | |||||| ||||||||||| | || || || || | Sbjct 5466 CAGCAAGTGTCCTCCCATCTTCCAATTGTTTACCAGCAAAGATCAACCTCTGCTGGTCCG 5407 Query 82699 GAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTT 82758 | || ||||| |||||||| |||||||| || || ||||| ||||| ||||| || Sbjct 5406 GTGGGATTCCCTCCTTATCCTGAATCTTCGCCTTCACATTATCAATGGTATCCGAGCTTT 5347 Query 82759 CTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || |||||||| |||||||| || || || ||||| || || ||||||||| Sbjct 5346 CCACCTCCAAAGTAATCGTCTTTCCGGTTAATGTCTTAACGAAAATCTGCATT 5294 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || || || ||||| || |||||||| || || ||||||| Sbjct 5067 TACCACCACGAAGACGGAGGACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAG 5008 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || ||| ||||| || ||||||||||| || || || || |||||||| ||||| | Sbjct 5007 CCAGGGTTCGGCCGTCCTCGAGTTGTTTTCCGGCGAAAATGAGCCTTTGTTGGTCTGGGG 4948 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||| ||||| ||||| || || ||||| || ||| ||| | Sbjct 4947 GGATGCCTTCTTTGTCTTGGATCTTAGCTTTGACGTTATCAATGGTGTCAGAGCTTTCAA 4888 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| || || || || || | ||||| || || |||||||| Sbjct 4887 CTTCCAAAGTGATGGTTTTTCCGGTGAGGGTCTTAACGAAAATCTGCAT 4839 >seq31517 Length=16670 Score = 181 bits (200), Expect = 2e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| || ||||| ||||| || || ||||| ||||| || ||||| || | Sbjct 3023 TACCACCTCTCAATCGAAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTATAGTCGG 2964 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| | | |||||||| || ||||| || |||||||| | || || || ||||| | Sbjct 2963 CTAGAGTACGGCCGTCTTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGG 2904 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||| ||||| ||||| || || ||||| ||||| ||| | Sbjct 2903 GAATACCTTCCTTATCTTGGATCTTGGCTTTCACGTTATCAATGGTATCCGAGCTTTCAA 2844 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||||||||||| ||||| || |||| ||||| || || || |||||| Sbjct 2843 CTTCCAAAGTTATGGTCTTTCCAGTCAGGGTCTTAACGAAGATTTGCATT 2794 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| || ||||| || || ||||| ||||| ||||| ||||| || |||| Sbjct 3251 TACCACCTCTCAATCGAAGAACCAAATGAAGAGTGGATTCCTTCTGAATATTGTAGTCAG 3192 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | || || ||||| || || || ||||||||||||| || || || ||||| | Sbjct 3191 CAAGTGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATTAACCTCTGCTGGTCTGGTG 3132 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||||||||| |||||||| || ||||| || || || || | || | Sbjct 3131 GGATACCCTCCTTATCTTGGATCTTTGCCTTAACATTGTCTATGGTGTCTGAACTCTCAA 3072 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| || ||||| || ||||| ||||| || || |||||||| Sbjct 3071 CCTCCAAAGTGATGGTCTTTCCGGTCAATGTCTTAACGAAGATCTGCAT 3023 Score = 170 bits (188), Expect = 4e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| || || ||||| ||||| ||||| ||||| ||||| || || || |||| Sbjct 3477 CCACCTCTTAATCGAAGAACCAAGTGTAGAGTCGATTCCTTCTGAATGTTGTAGTCAGCA 3418 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| || || || || || || |||||||| | ||| || |||||||| || Sbjct 3417 AGCGTACGACCATCCTCGAGCTGCTTACCTGCAAAGATCAATCTCTGCTGATCTGGTGGG 3358 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || |||||||| ||||| |||||||| || || || || || |||||| || | || || Sbjct 3357 ATCCCTTCCTTGTCTTGGATCTTTGCCTTAACGTTATCGATAGTATCAG-AGCTCTCAAC 3299 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || ||||| || ||||||||||| ||||| |||||||| Sbjct 3298 CTCCAAAGTGATTGTCTTTCCAGTCAACGTCTTAACAAAGATCTGCAT 3251 Score = 159 bits (176), Expect = 7e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| ||||| || || ||||| ||||| ||||| || |||| || | | || Sbjct 3694 ACGAAGAACCAAGTGAAGGGTTGATTCCTTCTGAATATTGTAGTCAGCAAGGGTACGGCC 3635 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || ||||||||||| | || || ||||| || || || |||||||| Sbjct 3634 GTCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTT 3575 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| ||||||||||| || ||||| ||||| ||||| | || || |||||||| || Sbjct 3574 ATCCTGAATCTTTGCCTTGACATTGTCAATAGTATCCGAACTCTCCACCTCCAAAGTGAT 3515 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || |||| ||||| ||||| |||||||| Sbjct 3514 GGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCAT 3479 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||||||| | || || ||||| || || ||||| || || ||||| ||||| | | Sbjct 2793 CCTCCTCTCAACCTGAGGACCAAGTGAAGGGTCGATTCCTTTTGGATATTGTAATCGGCT 2734 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||||||||| ||||| ||||| || ||||| | ||| || || |||||||| Sbjct 2733 AGAGTACGACCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGG 2674 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || || ||||| ||||| || || || || || ||| | || ||| Sbjct 2673 ATTCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTATCGATAGTGTCAGAACTCTCGACT 2614 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||| || || | || || || || || ||||| Sbjct 2613 TCCAAGGTGATTGTCTTTCCGGTGAGGGTTTTGACGAAGATTTGCAT 2567 Score = 147 bits (162), Expect = 4e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||||||| | || || | ||| || || || ||||| || || || ||||| | Sbjct 2565 CCTCCTCTCAATCTGAGGACAAGGTGGAGTGTGGACTCTTTTTGGATGTTGTAATCGGCC 2506 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | ||||| || ||||| ||||| |||||||| | |||||| ||||||||||| Sbjct 2505 AAAGTACGGCCGTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTTTGCTGATCTGGAGGA 2446 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 ||||||||||||||||| || || || || || || ||||| |||||| || | || || Sbjct 2445 ATTCCTTCCTTATCTTGGATTTTGGCCTTGACGTTATCAATTGTATCA-GAGCTCTCGAC 2387 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||| || || | || || || || |||||||| Sbjct 2386 CTCGAGAGTAATGGTCTTTCCAGTTAGGGTTTTCACGAAGATCTGCAT 2339 >seq40372 Length=8222 Score = 149 bits (164), Expect = 1e-30 Identities = 161/212 (76%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || | ||| ||||| ||||| ||||| || |||||||||| ||| |||| |||||| Sbjct 1275 AGGACGAGGTGAAGAGTTGATTCCTTCTGGATGTTATAATCAGCTAGGGTTCTGCCGTCT 1334 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 ||| ||||| || || ||||| || | ||||||||||||||| || ||||| || ||| Sbjct 1335 CTTAGCTGTTTCCCGGCGAAGATGAGCCGTTGTTGATCTGGAGGAATGCCTTCTTTGTCT 1394 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || || || ||||| ||||| || || |||||| | ||||| |||| ||| || || Sbjct 1395 TGGATTTTGGCTTTGACATTATCGATTGTATCAGAACTCTCTAC-TCCAGAGTAATGGTT 1453 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || | || || || || |||||||| Sbjct 1454 TTTCCAGTAAGGGTTTTCACGAAGATCTGCAT 1485 Score = 134 bits (148), Expect = 3e-26 Identities = 165/218 (76%), Gaps = 7/218 (3%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTG-CAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTAC 82653 |||||| || | ||| |||||||||| ||| ||| ||||||||||||| || | |||||| Sbjct 596 ACGCAGCACAAGGTGGCAGAGTAGATCCTT-CTGAATATTATAATCAGCTAAAGTTCTAC 654 Query 82654 CGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCT 82713 | ||||| || || || ||||||||||| | || ||||| || || || |||| | Sbjct 655 CATCTTCAAGCTGCTTCCCAGCAAAGATCAAAACGTGCTGATCAGGTGGAATCCCTT--T 712 Query 82714 TATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTT 82772 |||| ||||| |||| || ||||| ||||| || || | || | || || ||||| || Sbjct 713 TATCCTGAAT-TTTGGCTTCACATTATCAATAGTGTC-TGAGCTCTCAACCTCCAACGTG 770 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| ||| | ||||| ||||| |||||||| Sbjct 771 ATTGTCTTCCCTTCTCATGTCTTGACAAAAATCTGCAT 808 Score = 109 bits (120), Expect = 1e-18 Identities = 165/227 (73%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| ||||| | |||||| | |||| |||||||| || || ||||| ||||| | | Sbjct 810 CCTCCCCTCAATCTCAGAACCAGATGCAACGTAGATTCCTTTTG-ATATTGTAATCCGCT 868 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || |||| | ||||| | ||||| || || ||||| | | || ||||||||||| Sbjct 869 AGG-TTCTGCA-TCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 926 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || |||||||| || || || || | || |||||| | ||| || Sbjct 927 ATACCCTCCTTGTCCTGAATCTTGGCCTTCACGTTAT--ATTGTATCAGAACTTTCAACC 984 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || || || || || || || || || || |||||||| Sbjct 985 TCCAACGTAAT-GTTTTTCCCGTTAATGT-TTCACGAAGATCTGCAT 1029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 978574414156925