Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq138370 127 2e-24 seq31517 95.1 1e-14 >seq138370 Length=13449 Score = 127 bits (140), Expect = 2e-24 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGA 133512 ||||| | |||||||||||||| || |||||||| ||| || || || ||||||| Sbjct 5044 AAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCCAGGGTTCGGCCG--TCCTCGA 4987 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | || || || ||| ||||||||| || ||||| || ||||||||||| ||||| || Sbjct 4986 GTTGTTTTCCGGCGAAAATGAGCCTTTGTTGGTCTGGGGGGATGCCTTCTTTGTCTTGGA 4927 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| |||| | |||| ||||| | | || || || | |||| |||||| | Sbjct 4926 TCTTAGCTTTGACGTTATCAATGGTGTCAGAGCTTTCAACTTCCAAAGTGATGGTTTTTC 4867 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || |||||||||||||| Sbjct 4866 CGGTGAGGGTCTTAACGAAAATCTGCAT 4839 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACG--AGTCCTCGAGC 133514 ||| | |||||| ||||| || |||||||||||| | | || ||| ||| || ||| Sbjct 4814 ATGAAGGGTGGATTCTTTTTGGATATTGTAATCGGCTAAAGT--ACGGCCGTCTTCAAGC 4757 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || || | |||||||| || || |||||||| ||||| |||| Sbjct 4756 TGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATC 4697 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | ||||||| ||| || || | |||| || || ||| Sbjct 4696 TTGGCCTTGACGTTGTCTATTGTGTCGGAACTCTCGACTTCAAGAGTGATTGTCTTTCCG 4637 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || || ||||| Sbjct 4636 GTGAGGGTCTTAACAAAGATTTGCAT 4611 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| || || ||||| || |||||||| ||| ||| ||| | || || ||||| || | Sbjct 5264 GGTAGATTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGACCA-TCTTCCAGCTGTTTTC 5206 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||| || || || ||||| |||||||| || |||||| | Sbjct 5205 CAGCAAAGATAAGCCTCTGTTGATCTGGTGGGATTCCTTCCTTATCTTGGATCTTAGCTT 5146 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| | | ||| || || | || | || || ||||||| | Sbjct 5145 TCACGTTATCAATGGTGTCCGAGCTCTCGACTTCCAAAGTAATCGTCTTCCCGGTCAATG 5086 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 5085 TCTTAACGAAAATCTGCAT 5067 >seq31517 Length=16670 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||| || || || || |||||||||||| | | || |||| ||| |||| Sbjct 2772 AAGTGAAGGGTCGATTCCTTTTGGATATTGTAATCGGCTAGAGT--ACGACCGTCTTCGA 2715 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | ||||| || ||| | || | | ||||||||| |||||||| ||||||||||| || Sbjct 2714 GTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGA 2655 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| || | | || | ||||| | ||| || || | ||||| || || | Sbjct 2654 TCTTGGCTTTCACGTTATCGATAGTGTCAGAACTCTCGACTTCCAAGGTGATTGTCTTTC 2595 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || ||||| ||||| || ||||| Sbjct 2594 CGGTGAGGGTTTTGACGAAGATTTGCAT 2567 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||| || || ||||| |||||||| || | | || ||| |||||||| Sbjct 3684 AAGTGAAGGGTTGATTCCTTCTGAATATTGTAGTCAGCAAGGGT--ACGGCCGTCCTCGA 3627 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||||| || || | || | || |||||| || || ||||| |||||||| || | Sbjct 3626 GCTGCTTACCAGCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTATCCTGAA 3567 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||||| ||||| | |||| || || | |||||| || | |||| ||| || | Sbjct 3566 TCTTTGCCTTGACATTGTCAATAGTATCCGAACTCTCCACCTCCAAAGTGATGGTCTTCC 3507 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||||||| || || || |||||||| Sbjct 3506 CAGTCAGAGTCTTCACAAAGATCTGCAT 3479 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACG--AGTCCTCGAGCTGCTTGC 133521 ||||||||||| || || ||||||||| ||| || ||| ||||||||| ||||| | Sbjct 2535 GTGGACTCTTTTTGGATGTTGTAATCGGCCAAAGT--ACGGCCGTCCTCGAGTTGCTTTC 2478 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | | ||||| || ||||| || |||||||| || ||| || || Sbjct 2477 CGGCAAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATTTTGGCCT 2418 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| || || | | ||| || |||| || | ||| || || || || | Sbjct 2417 TGACGTTATCAATTGTATCAGAGCTCTCGACCTCGAGAGTAATGGTCTTTCCAGTTAGGG 2358 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| |||||||| Sbjct 2357 TTTTCACGAAGATCTGCAT 2339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481858293333000