Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq138370 150 4e-31 seq31517 125 2e-23 seq40372 111 4e-19 seq33895 86.0 1e-11 >seq138370 Length=13449 Score = 150 bits (166), Expect = 4e-31 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || |||||| | ||||| || ||||| |||||| | || Sbjct 4626 AAGACCCTCACCGGAAAGACAATCACTCTTGAAGTCGAGAGTTCCGACACAATAGACAAC 4685 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| |||||||| ||| || ||| |||||||||||||| Sbjct 4686 GTCAAGGCCAAGATCCAAGACAAAGAAGGCATTCCACCAGACCAGCAAAGACTTATCTTT 4745 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | ||||| || | ||||| ||||||||||| |||| ||||| || Sbjct 4746 GCCGGAAAGCAGCTTGAAGACGGCCGTACTTTAGCCGATTACAATATCCAAAAAGAATCC 4805 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 || ||||| |||||| | ||| Sbjct 4806 ACCCTTCATCTTGTTCTCAGA 4826 Score = 131 bits (144), Expect = 4e-25 Identities = 144/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-ATC 206243 || || ||||| |||||||| |||||||||||||| ||||| |||||||| | || | | Sbjct 4854 AAGACCCTCACCGGAAAAACCATCACTTTGGAAGTTGAAAGCTCTGACACCATTGATAAC 4913 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| ||||| ||||| |||||||| || || ||| ||||| || || || Sbjct 4914 GTCAAAGC-TAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAACAAAGGCTCATTTT 4972 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| || | || || || | || |||| ||||||||| ||||||||||||| Sbjct 4973 CGCCGGAAAACAACTCGAGGACGGCCGAACCCTGGCTGATTACAACATCCAGAAAGAGTC 5032 Query 206364 TACTCTTCA 206372 ||||| || Sbjct 5033 CACTCTCCA 5041 Score = 125 bits (138), Expect = 2e-23 Identities = 141/186 (76%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-ATCAGTAAAGCA 206252 || || || ||||| ||||||||||| || || || ||||| | || | | ||||| Sbjct 5091 ACCGGGAAGACGATTACTTTGGAAGTCGAGAGCTCGGACACCATTGATAACGTGAAAGC- 5149 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 ||||| ||||| || |||||||| || || || || |||||||| || ||||| Sbjct 5150 TAAGATCCAAGATAAGGAAGGAATCCCACCAGATCAACAGAGGCTTATCTTTGCTGGAAA 5209 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||| |||||||||| | |||||||| ||||||||| ||||||| || ||||| || || Sbjct 5210 ACAGCTGGAAGATGGTCGCACTTTGGCTGATTACAACATCCAGAAGGAATCTACCCTCCA 5269 Query 206373 CCTTGT 206378 |||||| Sbjct 5270 CCTTGT 5275 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| ||||| |||||||| |||||||| || || || | || || ||| Sbjct 5319 ACCGGAAAGACGATTACTTTGGAGGTGGAAAGCTCGGATACCATTGATAATGTGAAGGCG 5378 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || ||||| |||||| || || | ||||| || || || Sbjct 5379 AAGATTCAGGATAAGGAGGGAATCCCACCGGACCAGCAGAGGTTGATCTTTGCTGGTAAA 5438 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| ||||| | || ||||| || ||||||||||||| |||||||| Sbjct 5439 CAATTGGAAGATGGGAGGACACTTGCTGATTATAATATCCAGAAAGAGTCCACTCTTCAT 5498 Query 206374 CTTGTTTTGAGACTTCG 206390 |||||| | | ||||| Sbjct 5499 CTTGTTCTTCGTCTTCG 5515 Score = 96.9 bits (106), Expect = 8e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||| || ||||| || ||||||| || || ||||||||||| | ||||||||| Sbjct 5275 ACAAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGACCATCTTCC 5216 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||| ||||| || |||||||||| |||||| Sbjct 5215 AGCTGTTTTCCAGCAAAGATAAGCCTCTGTTGA 5183 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | | |||||| |||||||| ||||||||||||| |||||| ||||| | ||| Sbjct 5515 CGAAGACGAAGAACAAGATGAAGAGTGGACTCTTTCTGGATATTATAATCAGCAAGTGTC 5456 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 || |||||||||| || || || || ||||| Sbjct 5455 CTCCCATCTTCCAATTGTTTACCAGCAAAGAT 5424 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 204757 TCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCC 204816 ||| | |||||| ||||| || || ||||| |||| ||| || || || ||||| | || Sbjct 4826 TCTGAGAACAAGATGAAGGGTGGATTCTTTTTGGATATTGTAATCGGCTAAAGTACGGCC 4767 Query 204817 ATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||| |||||||||||||| |||||||| | ||| || Sbjct 4766 GTCTTCAAGCTGCTTTCCGGCAAAGATAAGTCTTTGCTG 4728 >seq31517 Length=16670 Score = 125 bits (138), Expect = 2e-23 Identities = 144/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-AT 206242 |||||| ||||| ||||| || ||||| |||||||| || ||||||||||| |||| | Sbjct 2581 CAAAACCCTCACCGGAAAGACAATCACCTTGGAAGTCGAGAGTTCTGACACTATCGATAA 2640 Query 206243 CAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 | ||||| ||||| || || || |||||||| || ||| || ||| | |||| Sbjct 2641 CGTGAAAGC-CAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCAGCAGAGATTGATCT 2699 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 ||||||||||||| | ||||| || | ||| | ||||||||||| |||| || || | Sbjct 2700 TCGCCGGAAAGCAACTCGAAGACGGTCGTACTCTAGCCGATTACAATATCCAAAAGGAAT 2759 Query 206363 CTACTCTTCAC 206373 | || |||||| Sbjct 2760 CGACCCTTCAC 2770 Score = 120 bits (132), Expect = 7e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || || ||| | || || || || ||||| ||| | || Sbjct 2354 AAAACCCTAACTGGAAAGACCATTACTCTCGAGGTCGAGAGCTCTGATACAATTGATAAC 2413 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||||| || ||||||||| || || |||||| | ||||| Sbjct 2414 GTCAAGGCCAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCAGCAAAGATTGATCTTT 2473 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||| | || || || | |||||||||||||||||| |||| |||||||| Sbjct 2474 GCCGGAAAGCAACTCGAGGACGGCCGTACTTTGGCCGATTACAACATCCAAAAAGAGTCC 2533 Query 206365 ACTCTTCACCTTGT 206378 || || |||||||| Sbjct 2534 ACACTCCACCTTGT 2547 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || ||||||||||| || || ||||| ||||| | || || ||| | Sbjct 3047 ACCGGAAAGACCATCACTTTGGAGGTTGAGAGTTCAGACACCATAGACAATGTTAAGGCA 3106 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || || || || || ||| || || | ||||| || || ||| Sbjct 3107 AAGATCCAAGATAAGGAGGGTATCCCACCAGACCAGCAGAGGTTAATCTTTGCTGGTAAG 3166 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||| | |||||||||||||| | || || ||||| | ||||| || || |||||||| Sbjct 3167 CAGCTTGAAGATGGAAGGACACTTGCTGACTACAATATTCAGAAGGAATCCACTCTTCA 3225 Score = 95.1 bits (104), Expect = 3e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-ATC 206243 || || || || ||||| || || ||||||||||| ||||| || || || | || | | Sbjct 2810 AAGACCCTGACTGGAAAGACCATAACTTTGGAAGTTGAAAGCTCGGATACCATTGATAAC 2869 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| ||||| ||||| || ||||| ||| || ||| || || | ||||| Sbjct 2870 GTGAAAGC-CAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAGCAGAGGTTGATCTT 2928 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| || ||| | ||||| || | ||| | ||||| || ||| ||||||| || || Sbjct 2929 TGCCGGCAAACAGCTTGAAGACGGCCGTACTCTAGCCGACTATAACATCCAGAAGGAATC 2988 Query 206364 TACTCTTCACCTTGTT 206379 || |||||| | ||| Sbjct 2989 AACCCTTCACTTGGTT 3004 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || ||| | || ||||| || ||||||||||| || || || ||||| Sbjct 3254 CAGATCTTTGTTAAGACGTTGACTGGAAAGACAATCACTTTGGAGGTTGAGAGCTCTGAT 3313 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||| ||||| || ||||| || || || || Sbjct 3314 ACTATCGATAACGTTAAGGCAAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAGCAG 3373 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| || || |||||| | || ||||| | || | || || |||||| | Sbjct 3374 AGATTGATCTTTGCAGGTAAGCAGCTCGAGGATGGTCGTACGCTTGCTGACTACAACATT 3433 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| || || ||||| ||| | ||| Sbjct 3434 CAGAAGGAATCGACTCTACACTTGGTT 3460 >seq40372 Length=8222 Score = 111 bits (122), Expect = 4e-19 Identities = 144/195 (74%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || |||||||| || ||| |||| || || |||||||| ||| |||| Sbjct 1470 AAAACCCTTACTGGAAAAACCATTACTCTGGA-GTAGAGAGTTCTGATACAATCGATAAT 1412 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || ||||| |||||||| ||| || || ||| | || ||||| Sbjct 1411 GTCAAAGCCAAA-ATCCAAGACAAAGAAGGCATTCCTCCAGATCAACAACGGCTCATCTT 1353 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| || ||| | ||| || || || | || ||||| ||| ||||||| || || Sbjct 1352 CGCCGGGAAACAGCTAAGAGACGGCAGAACCCTAGCTGATTATAACATCCAGAAGGAATC 1293 Query 206364 TACTCTTCACCTTGT 206378 ||||||||||| || Sbjct 1292 AACTCTTCACCTCGT 1278 >seq33895 Length=17743 Score = 86.0 bits (94), Expect = 1e-11 Identities = 158/218 (72%), Gaps = 14/218 (6%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAA-AACGCT-CACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTG 206230 ||||| || ||| ||| || ||| || || || |||||||||||||| ||||| |||| Sbjct 10880 CAGATTTTCGTCAACAACCCTACACCGGTAAGACCATCACTTTGGAAGTCGAAAGCTCTG 10939 Query 206231 A---CACAGTCGAATCAGTAAAGCAAAAGATTCA-AGAAAAAGAAGGAATTTTGCCGGAC 206286 | || ||| | | | ||| |||||||| |||| || |||||| || ||| Sbjct 10940 ACCCCATTGTCAACGCTTAAGAGC-CAAGATTCATAGAACAAAGAGGAATCCCACCAGAC 10998 Query 206287 GC-TCAAAGACTTATCTTCGCCGGAAA--GCAGTTGGAAGATGG-AAGGACTTTGGCCGA 206342 | ||| |||| || ||||||||||| ||| | |||||||| ||||| | || || Sbjct 10999 CCAACAACGACTGATTTTCGCCGGAAAATACAGCTTGAAGATGGCCTGGACTCTTGCGGA 11058 Query 206343 TTACAACGT-CCAGAA-AGAGTCTACTCTTCACCTTGT 206378 ||||||| | |||||| || || |||||||| ||||| Sbjct 11059 TTACAACATCCCAGAAGCGAATC-ACTCTTCATCTTGT 11095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177905436922575