Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq31517 107 2e-18 seq138370 98.7 9e-16 >seq31517 Length=16670 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | |||||||| | ||||| | |||||||| Sbjct 2567 ATGCAAATCTTCGTCAAAACCCTCACCGGAAAGACAATCACCTTGGAAGTCGAGAGTTCT 2626 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||||||| | || ||| || || || || || || || || || || ||| Sbjct 2627 GACACTATCGATAACGTGAAAGCCAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCAG 2686 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | || | || ||| || ||||||||||| | | | | | | |||||||||| Sbjct 2687 CAGAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGTCGTACTCTAGCCGATTACAAT 2746 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || ||||| ||||| ||| |||| || || | || ||||||||||||| Sbjct 2747 ATCCAAAAGGAATCGACCCTTCACTTGGTCCTCAGGTTGAGAGGAGGAA 2795 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| |||| ||||| | || || |||| ||||| | Sbjct 2339 ATGCAGATCTTCGTGAAAACCCTAACTGGAAAGACCATTACTCTCGAGGTCGAGAGCTCT 2398 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || ||||| ||||| || || || || || |||||| Sbjct 2399 GATACAATTGATAACGTCAAGGCCAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 2458 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | | ||| || |||||||| || | | | | | ||||||||| Sbjct 2459 CAAAGATTGATCTTTGCCGGAAAGCAACTCGAGGACGGCCGTACTTTGGCCGATTACAAC 2518 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || |||||||| ||||| | || | || | |||||||||||||| Sbjct 2519 ATCCAAAAAGAGTCCACACTCCACCTTGTCCTCAGATTGAGAGGAGG 2565 >seq138370 Length=13449 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || | |||||||| | ||||| | |||||||| | Sbjct 4611 ATGCAAATCTTTGTTAAGACCCTCACCGGAAAGACAATCACTCTTGAAGTCGAGAGTTCC 4670 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || || || || ||||| || || || || || ||| Sbjct 4671 GACACAATAGACAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATTCCACCAGACCAG 4730 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| || | | ||| || || || ||||| | | | | | |||||||||| Sbjct 4731 CAAAGACTTATCTTTGCCGGAAAGCAGCTTGAAGACGGCCGTACTTTAGCCGATTACAAT 4790 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||||||||||||| ||||| | || | ||||| |||||||| Sbjct 4791 ATCCAAAAAGAATCCACCCTTCATCTTGTTCTCAGATTAAGAGGAGG 4837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443655771444000