Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq31517 109 5e-19 seq138370 86.0 6e-12 >seq31517 Length=16670 Score = 109 bits (120), Expect = 5e-19 Identities = 167/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 35503 TTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTA 35562 || ||| |||||||| | | | ||||| || | || ||||| ||||| ||||| Sbjct 3712 TTAATTCCCACCACGAAGACGAAGAACCAAGTGAAGGGTTGATTCCTTCTGAATATTGTA 3653 Query 35563 ATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 || || | ||| || |||| || ||||||||||| ||||| ||||||| |||||| || Sbjct 3652 GTCAGCAAGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATC 3593 Query 35623 CGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGA 35682 || || | | ||||| ||| |||||| ||| | | | | | || || ||| Sbjct 3592 CGGTGGGATCCCTTCCTTATCCTGAATCTTTGCCTTGACATTGTCAATAGTATC---CGA 3536 Query 35683 ---TTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||||||| ||||| || || || |||| ||| |||||||| |||||||| Sbjct 3535 ACTCTCCACCTCCAAAGTGATGGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCAT 3479 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | ||| | | ||||| |||| || ||||| ||||||||||| || || Sbjct 3477 CCACCTCTTAATCGAAGAACCAAGTGTAGAGTCGATTCCTTCTGAATGTTGTAGTCAGCA 3418 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || ||||||||||| ||||| ||||| | |||||| || | || Sbjct 3417 AGCGTACGACCATCCTCGAGCTGCTTACCTGCAAAGATCAATCTCTGCTGATCTGGTGGG 3358 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | | |||||||| ||||||| ||| | | | | || || |||| || Sbjct 3357 ATCCCTTCCTTGTCTTGGATCTTTGCCTTAACGTTATCGATAGTATCAGAGCTC---TCA 3301 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||| ||||| || || || ||||| || || ||||| |||||||| Sbjct 3300 ACCTCCAAAGTGATTGTCTTTCCAGTCAACGTCTTAACAAAGATCTGCAT 3251 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | || ||||| ||||| ||||| || || | || | | || || Sbjct 3231 ACCAAATGAAGAGTGGATTCCTTCTGAATATTGTAGTCAGCAAGTGTCCTTCCATCTTCA 3172 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 ||||||||||| ||||| || |||| ||||||||| | || | | |||||| || | Sbjct 3171 AGCTGCTTACCAGCAAAGATTAACCTCTGCTGGTCTGGTGGGATACCCTCCTTATCTTGG 3112 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTT 35704 |||||| ||| | | | | | ||||| ||| || ||||||| ||||| || Sbjct 3111 ATCTTTGCCTTAACATTGTCTATGGTGTCTGAACTC---TCAACCTCCAAAGTGATGGTC 3055 Query 35705 TTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || ||||| || || || || |||||||| Sbjct 3054 TTTCCGGTCAATGTCTTAACGAAGATCTGCAT 3023 >seq138370 Length=13449 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/197 (70%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || || || ||||| || | || | | | || |||| || ||||| ||||| Sbjct 5486 CTCTTTCTGGATATTATAATCAGCAAGTGTCCTCCCATCTTCCAATTGTTTACCAGCAAA 5427 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||||| || | | |||||| ||| ||||| ||||| | | Sbjct 5426 GATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGAATCTTCGCCTTCACATT 5367 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | || || ||| ||||||||||| || ||||| || || || || || || Sbjct 5366 ATCAATGGTATCCGAGCT---TTCCACCTCCAAAGTAATCGTCTTTCCGGTTAATGTCTT 5310 Query 35722 CACAAATATCTGCATTC 35738 || || |||||||||| Sbjct 5309 AACGAAAATCTGCATTC 5293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449336550561000