Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq38170 127 2e-24 seq31517 122 9e-23 seq138370 120 3e-22 seq40372 100 3e-16 >seq38170 Length=7308 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || ||||||||||| || |||||||||||| | ||| | | ||| Sbjct 6464 ACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTTCTGCCGCCTTCG 6523 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 |||||||| || ||||| || | ||| || || || || || || |||||||| ||||| Sbjct 6524 AGCTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCCGGTGGGATACCTTCTTTGTCTTGG 6583 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || |||||| ||| | ||||| || ||||| || || || || |||||||| Sbjct 6584 ATCTTGGCTTTGACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTT 6643 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 | |||| ||||| ||||| || ||||| ||| Sbjct 6644 TCAGTTAGGGTTTTCACGAAGATCTGCATCTTG 6676 >seq31517 Length=16670 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| | || | || ||||| || ||||| || ||||| |||||||| ||| | Sbjct 2565 CCTCCTCTCAATCTGAGGACAAGGTGGAGTGTGGACTCTTTTTGGATGTTGTAATCGGCC 2506 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| ||||| || || || ||||| ||||| | |||||||| || || Sbjct 2505 AAAGTACGGCCGTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTTTGCTGATCTGGAGGA 2446 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| ||||| ||||| || | ||| || || || || Sbjct 2445 ATTCCTTCCTTATCTTGGATTTTGGCCTTGACGTTATCAATTGTATCAGAGCTCTCGACC 2386 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||||||||| || || |||| ||||| ||||| || ||||| Sbjct 2385 TCGAGAGTAATGGTCTTTCCAGTTAGGGTTTTCACGAAGATCTGCAT 2339 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | ||| | || | |||||| || |||||||| |||||||||||||| || Sbjct 3477 CCACCTCTTAATCGAAGAACCAAGTGTAGAGTCGATTCCTTCTGAATGTTGTAGTCAGCA 3418 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || |||||||| || |||||||| ||||| | ||||||||| || || Sbjct 3417 AGCGTACGACCATCCTCGAGCTGCTTACCTGCAAAGATCAATCTCTGCTGATCTGGTGGG 3358 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || ||| || || || | || || || || || Sbjct 3357 ATCCCTTCCTTGTCTTGGATCTTTGCCTTAACGTTATCGATAGTATCAGAGCTCTCAACC 3298 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| || || || || || || || ||||| || || ||||| Sbjct 3297 TCCAAAGTGATTGTCTTTCCAGTCAACGTCTTAACAAAGATCTGCAT 3251 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | ||| | || | ||| || || |||||||| || ||||| |||||| | Sbjct 3021 CCACCTCTCAATCGAAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTATAGTCGGCT 2962 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || ||||||||||| ||||| ||||| | |||||| || || || Sbjct 2961 AGAGTACGGCCGTCTTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 2902 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || || ||| || || | || || || ||| || Sbjct 2901 ATACCTTCCTTATCTTGGATCTTGGCTTTCACGTTATCAATGGTATCCGAGCTTTCAACT 2842 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | ||| ||||| || || || | || |||||||| ||||||||| Sbjct 2841 TCCAAAGTTATGGTCTTTCCAGTCAGGGTCTTAACGAAGATTTGCATT 2794 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | ||| | || | || || ||||||||||| ||||| |||||||| || Sbjct 3249 CCACCTCTCAATCGAAGAACCAAATGAAGAGTGGATTCCTTCTGAATATTGTAGTCAGCA 3190 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || ||||| || || ||||| || || | |||||| || || || Sbjct 3189 AGTGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATTAACCTCTGCTGGTCTGGTGGG 3130 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || ||||| || ||| || || ||| | ||||| || || || Sbjct 3129 ATACCCTCCTTATCTTGGATCTTTGCCTTAACATTGTCTATGGTGTCTGAACTCTCAACC 3070 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| ||||| || ||||| || || |||||||| || ||||| Sbjct 3069 TCCAAAGTGATGGTCTTTCCGGTCAATGTCTTAACGAAGATCTGCAT 3023 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||||||||| | | | || | ||| || || ||||||||||| || ||||| ||| Sbjct 2795 TTCCTCCTCTCAACCTGAGGACCAAGTGAAGGGTCGATTCCTTTTGGATATTGTAATCGG 2736 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | | || || ||| ||||| || || || || || ||||| | |||||| || || | Sbjct 2735 CTAGAGTACGACCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAG 2676 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || || || || || ||| || || | ||||| || || | Sbjct 2675 GGATTCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTATCGATAGTGTCAGAACTCTCGA 2616 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | || || || || ||||| | ||||| ||||| |||||||| Sbjct 2615 CTTCCAAGGTGATTGTCTTTCCGGTGAGGGTTTTGACGAAGATTTGCAT 2567 >seq138370 Length=13449 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 ||||||| || || || | ||| ||||| || || |||||||| || |||||||| || | Sbjct 5295 TTCCTCCCCTTAGCCGAAGCACAAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCAG 5236 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 |||| | || || || || |||||||| || ||||| || | | ||| ||||| || Sbjct 5235 CCAAAG-TGCGACCATCTTCCAGCTGTTTTCCAGCAAAGATAAGCCTCTGTTGATCTGGT 5177 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || ||||| || ||||| || || ||| || || | ||||| || || Sbjct 5176 GGGATTCCTTCCTTATCTTGGATCTTAGCTTTCACGTTATCAATGGTGTCCGAGCTCTCG 5117 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | |||||| || || ||||| || || ||||||||||| ||||| Sbjct 5116 ACTTCCAAAGTAATCGTCTTCCCGGTCAATGTCTTAACGAAAATCTGCAT 5067 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| | || | || || || || |||||||| ||||| || ||||| ||| | Sbjct 4837 CCTCCTCTTAATCTGAGAACAAGATGAAGGGTGGATTCTTTTTGGATATTGTAATCGGCT 4778 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || ||||| || || ||||| || | | ||||| || || || Sbjct 4777 AAAGTACGGCCGTCTTCAAGCTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGA 4718 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| ||||| || || ||||| ||| | ||||||||| || || Sbjct 4717 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTGTCTATTGTGTCGGAACTCTCGACT 4658 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || || || ||||| | || ||||| || |||||||| Sbjct 4657 TCAAGAGTGATTGTCTTTCCGGTGAGGGTCTTAACAAAGATTTGCAT 4611 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || ||||| || || || |||||||| || | | ||| | ||| ||||| ||| Sbjct 5041 TGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCCAGGGTTCGGCCGTCCTCGAGTTGT 4982 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || || ||||| | | || || || || || ||||||||||| ||||| || || Sbjct 4981 TTTCCGGCGAAAATGAGCCTTTGTTGGTCTGGGGGGATGCCTTCTTTGTCTTGGATCTTA 4922 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 |||||| || | ||||| || ||| || || | ||| |||||||| ||||| Sbjct 4921 GCTTTGACGTTATCAATGGTGTCAGAGCTTTCAACTTCCAAAGTGATGGTTTTTCCGGTG 4862 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | || ||||||||||| ||||| Sbjct 4861 AGGGTCTTAACGAAAATCTGCAT 4839 >seq40372 Length=8222 Score = 100 bits (110), Expect = 3e-16 Identities = 160/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | |||||||| || || |||||||| || ||||| || || | Sbjct 1261 CCTCCACGGAGGCG-AGGACGAGGTGAAGAGTTGATTCCTTCTGGATGTTATAATCAGCT 1319 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| ||| |||||||| || || || || | || || ||||| || || Sbjct 1320 AGGGTTCTGCCGTCTCTTAGCTGTTTCCCGGCGAAGATGAGCCGTTGTTGATCTGGAGGA 1379 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| ||||| ||||| |||||| || | ||| || || || || Sbjct 1380 ATGCCTTCTTTGTCTTGGATTTTGGCTTTGACATTATCGATTGTATCAGAACTCTCTAC- 1438 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||||||||| || || | ||||| ||||| || ||||| Sbjct 1439 TCCAGAGTAATGGTTTTTCCAGTAAGGGTTTTCACGAAGATCTGCAT 1485 Score = 82.4 bits (90), Expect = 8e-11 Identities = 158/227 (70%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || | || || || || || | ||| |||||||||||| | ||||| || | Sbjct 810 CCTCCCCTCAATCTCAGAACCAGATGCAACGTAGATTCCTTTTGA-TATTGTAATCCGCT 868 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | | | || || || | ||||||||| || || ||||||||||||||||| || || Sbjct 869 AGGTTCTGCA--TCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 926 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || || || | | ||| || || ||| || Sbjct 927 ATACCCTCCTTGTCCTGAATCTTGGCCTTCAC--GTTATATTGTATCAGAACTTTCAACC 984 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||| ||||| || ||||| | ||| ||||| || ||||| Sbjct 985 TCCAACGTAAT-GTTTTTCCCGTTAATG-TTTCACGAAGATCTGCAT 1029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503764857609000