Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq38170 113 4e-20 seq31517 89.7 4e-13 >seq38170 Length=7308 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | | | || ||||||||||||| ||| Sbjct 6476 GTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTTCTGCCGCCTTCGAGCTGTTTTCCG 6535 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | |||||||| ||||| ||||| || | ||| ||||| || ||||||| ||| Sbjct 6536 GCAAAGATGAGACGTTGTTGGTCCGGTGGGATACCTTCTTTGTCTTGGATCTTGGCTTTG 6595 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | || |||||| ||||| ||||| | ||| | || || ||| Sbjct 6596 ACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTTTCAGTTAGGGTT 6655 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 6656 TTCACGAAGATCTGCAT 6672 >seq31517 Length=16670 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| || | ||||| || | || || || || || || || |||||| Sbjct 3021 CCACCTCTCAATCGAAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTATAGTCGGCT 2962 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || ||||||| |||||||| ||||| | || | | ||| || || || || Sbjct 2961 AGAGTACGGCCGTCTTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 2902 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || ||||| ||||||| ||||| | | || | || || | | ||||||| Sbjct 2901 ATACCTTCCTTATCTTGGATCTTGGCTTTCACGTTATCAATGGTATCCGAGCTTTCAACT 2842 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | |||||| | || || ||||| || || || ||||||||||| Sbjct 2841 TCCAAAGTTATGGTCTTTCCAGTCAGGGTCTTAACGAAGATTTGCAT 2795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423595269035400