Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq106419 129 7e-25 seq73953 107 2e-18 seq49990 107 2e-18 seq200694 89.7 6e-13 seq46817 89.7 6e-13 seq27346 89.7 6e-13 >seq106419 Length=70059 Score = 129 bits (142), Expect = 7e-25 Identities = 278/416 (67%), Gaps = 0/416 (0%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | || || || || |||| || | ||| ||||| | |||||| Sbjct 23842 TCAAGAATGTCTGCACGGTTGGTAGCTGCAACCACAATAATACCAGTGTTTCCTTCAAAG 23783 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | || || | ||||||||||| |||||||| | | Sbjct 23782 CCATCCATTTCTGTCAAAAGCTGGTTCAGGGTTTGTTCTCTTTCATCATTACCCCCTCCA 23723 Query 11603 CCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 ||||| | | |||| | || || |||||||| ||||||| || || ||||| || Sbjct 23722 ATACCAGTCCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAATACGATACAAGGG 23663 Query 11663 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAAC 11722 ||| || ||| ||| || ||||| | ||| ||| |||||| |||||||||||| Sbjct 23662 GCATTCTCCTTGGCCTTTTTGAAAAGATCTCTAACTCTTGAGGCACCAACACCAACAAAC 23603 Query 11723 ATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATG 11782 ||||| ||||| | || | || || ||||| ||| || |||||| || || Sbjct 23602 ATCTCAACAAACTCTGAACCTGAAATAGAGAAAAATGGAACACCTGCTTCACCAGCAATA 23543 Query 11783 GCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGG 11842 || ||| || || |||||||| || ||||| ||| | ||||| | || || Sbjct 23542 GCCTTGGCTAGCAGTGTCTTTCCGGTTCCTGGAGGACCAACAAGAAGAACACCCTTTGGA 23483 Query 11843 ATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 ||| | |||||| || | ||||| || | ||| ||||| || || | ||| Sbjct 23482 ATCCTAGCACCAACAGCAGTGAACCTCTCTGGCTTCTTCAGAAACTCTACGACCTC 23427 >seq73953 Length=35596 Score = 107 bits (118), Expect = 2e-18 Identities = 229/341 (67%), Gaps = 16/341 (5%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCA-- 11539 |||||| | |||| || ||||| ||||| | ||| | || |||| ||| || Sbjct 24199 ATCAAGAACATCCGGCCGGTTAGTAGCCGCCAAAACAATAACACCAGA---ATTCCCAGA 24255 Query 11540 -AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 || || ||||| || || | ||||||||||| |||||||| || ||||||||| | Sbjct 24256 AAACCCGTCCATTTCCGTCAACAATTGATTAATAGTTTGTTCCCTTTCATCATTTCCGCC 24315 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | | ||| || | | |||| | || |||||||| ||||||||||| || || ||||| Sbjct 24316 CCCAAGACCCGCCCCTCTTTGCCTTCCAACCGCATCTATCTCATCAATAAACACTATACA 24375 Query 11659 TGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 || | |||||| || | ||||| ||||| | |||||| ||||| ||| Sbjct 24376 AGGTGCTTTCGATTTT-----GCCTTCTCAAAAAGATCCCTAACCCTAGATGCACCAACA 24430 Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCA 11773 || ||||| | || || || | | || | ||| || ||||| ||| | || Sbjct 24431 CCCACAAAAAGTTCAACGAACTCCGAAGCCGCACACGAGAAAAATGGCACACCCGCCTCT 24490 Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || | || | || | ||||||||||| || ||||| Sbjct 24491 CCGGCAACCGCCCTAGCCAAAAGGGTCTTTCCGGTCCCTGG 24531 >seq49990 Length=8241 Score = 107 bits (118), Expect = 2e-18 Identities = 229/341 (67%), Gaps = 16/341 (5%) Strand=Plus/Minus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCA-- 11539 |||||| | |||| || ||||| ||||| | ||| | || |||| ||| || Sbjct 4228 ATCAAGAACATCCGGCCGGTTAGTAGCCGCCAAAACAATAACACCAGA---ATTCCCAGA 4172 Query 11540 -AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 || || ||||| || || | ||||||||||| |||||||| || ||||||||| | Sbjct 4171 AAACCCGTCCATTTCCGTCAACAATTGATTAATAGTTTGTTCCCTTTCATCATTTCCGCC 4112 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | | ||| || | | |||| | || |||||||| ||||||||||| || || ||||| Sbjct 4111 CCCAAGACCCGCCCCTCTTTGCCTTCCAACCGCATCTATCTCATCAATAAACACTATACA 4052 Query 11659 TGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 || | |||||| || | ||||| ||||| | |||||| ||||| ||| Sbjct 4051 AGGTGCTTTCGATTTT-----GCCTTCTCAAAAAGATCCCTAACCCTAGATGCACCAACA 3997 Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCA 11773 || ||||| | || || || | | || | ||| || ||||| ||| | || Sbjct 3996 CCCACAAAAAGTTCAACGAACTCCGAAGCCGCACACGAGAAAAATGGCACACCCGCCTCT 3937 Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || | || | || | ||||||||||| || ||||| Sbjct 3936 CCGGCAACCGCCCTAGCCAAAAGGGTCTTTCCGGTCCCTGG 3896 >seq200694 Length=3324 Score = 89.7 bits (98), Expect = 6e-13 Identities = 181/260 (70%), Gaps = 14/260 (5%) Strand=Plus/Plus Query 9285 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 9344 |||||| | || | ||||| | || || ||| || || ||||||||||| |||||| Sbjct 1804 AATTACAGAGAAGCATACGGGATCTTCGCCTGCAATGGCATTCTCTTCAACCACGAATCA 1863 Query 9345 CCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTAC-CGAG-GGTA--TC-AAACAAA 9399 || | |||||| | |||| ||||| ||||| || |||| |||| || || |||| Sbjct 1864 CCACGGAGAGGTGAAAACTTCGTGACACGTAAGATCACACGAGCGGTAGGTCGAATCAAA 1923 Query 9400 TCATGAAGGGTGA-AAAG-GAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTG 9457 | ||||| | | || || | || ||||| ||| || | ||| ||||| || Sbjct 1924 ----GTAGGGTTACAGAGCAAGCTGTTT---TTGGGGAACTTACAGGCGTCAAGAGACTG 1976 Query 9458 GGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGA 9517 ||| ||| ||||| |||||||| |||||||| ||||| || || ||| | || || Sbjct 1977 GGGGTTCGCCGGAGACTACGTTGAAGCAATGTGGCTGATGCTACAGCAGGAGAAGGCGGA 2036 Query 9518 CGAATATGTAGTAGCAACGG 9537 ||| || || || || |||| Sbjct 2037 CGACTACGTGGTGGCGACGG 2056 >seq46817 Length=7747 Score = 89.7 bits (98), Expect = 6e-13 Identities = 181/260 (70%), Gaps = 14/260 (5%) Strand=Plus/Minus Query 9285 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 9344 |||||| | || | ||||| | || || ||| || || ||||||||||| |||||| Sbjct 7251 AATTACAGAGAAGCATACGGGATCTTCGCCTGCAATGGCATTCTCTTCAACCACGAATCA 7192 Query 9345 CCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTAC-CGAG-GGTA--TC-AAACAAA 9399 || | |||||| | |||| ||||| ||||| || |||| |||| || || |||| Sbjct 7191 CCACGGAGAGGTGAAAACTTCGTGACACGTAAGATCACACGAGCGGTAGGTCGAATCAAA 7132 Query 9400 TCATGAAGGGTGA-AAAG-GAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTG 9457 | ||||| | | || || | || ||||| ||| || | ||| ||||| || Sbjct 7131 ----GTAGGGTTACAGAGCAAGCTGTTT---TTGGGGAACTTACAGGCGTCAAGAGACTG 7079 Query 9458 GGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGA 9517 ||| ||| ||||| |||||||| |||||||| ||||| || || ||| | || || Sbjct 7078 GGGGTTCGCCGGAGACTACGTTGAAGCAATGTGGCTGATGCTACAGCAGGAGAAGGCGGA 7019 Query 9518 CGAATATGTAGTAGCAACGG 9537 ||| || || || || |||| Sbjct 7018 CGACTACGTGGTGGCGACGG 6999 >seq27346 Length=4931 Score = 89.7 bits (98), Expect = 6e-13 Identities = 181/260 (70%), Gaps = 14/260 (5%) Strand=Plus/Plus Query 9285 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 9344 |||||| | || | ||||| | || || ||| || || ||||||||||| |||||| Sbjct 1990 AATTACAGAGAAGCATACGGGATCTTCGCCTGCAATGGCATTCTCTTCAACCACGAATCA 2049 Query 9345 CCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTAC-CGAG-GGTA--TC-AAACAAA 9399 || | |||||| | |||| ||||| ||||| || |||| |||| || || |||| Sbjct 2050 CCACGGAGAGGTGAAAACTTCGTGACACGTAAGATCACACGAGCGGTAGGTCGAATCAAA 2109 Query 9400 TCATGAAGGGTGA-AAAG-GAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTG 9457 | ||||| | | || || | || ||||| ||| || | ||| ||||| || Sbjct 2110 ----GTAGGGTTACAGAGCAAGCTGTTT---TTGGGGAACTTACAGGCGTCAAGAGACTG 2162 Query 9458 GGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGA 9517 ||| ||| ||||| |||||||| |||||||| ||||| || || ||| | || || Sbjct 2163 GGGGTTCGCCGGAGACTACGTTGAAGCAATGTGGCTGATGCTACAGCAGGAGAAGGCGGA 2222 Query 9518 CGAATATGTAGTAGCAACGG 9537 ||| || || || || |||| Sbjct 2223 CGACTACGTGGTGGCGACGG 2242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626002082820000