Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq106419 114 2e-20 seq200694 100 4e-16 seq46817 100 4e-16 seq27346 100 4e-16 >seq106419 Length=70059 Score = 114 bits (126), Expect = 2e-20 Identities = 221/322 (69%), Gaps = 8/322 (2%) Strand=Plus/Minus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT---C 14206 |||||||||||||| || ||||| || || || | ||||||||| | ||||||||| | Sbjct 23788 TCAAAGCCATCCATTTCTGTCAAAAGCTGGTTCAGGGTTTGTTCTCTTTCATCATTACCC 23729 Query 14207 GCAGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266 | |||||| | | || |||| | || || || ||||||||||| | || ||| Sbjct 23728 CCTCCAATACCAGTCCCTCT---TTGCCTCCCAACAGCATCAATTTCATCAACAAATACG 23672 Query 14267 ATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 14326 ||||| || ||| || ||| || || | ||||| ||||| |||||| ||| Sbjct 23671 ATACAAGGGGCATTCTCCTTGGCCTTTTTGAAAAGATCTCTAACTCTTGAGGCACCAACA 23612 Query 14327 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTC 14385 || ||||||||||| ||||| | | | ||| || | || || || || | ||| Sbjct 23611 CCAACAAACATCTCAACAAACTCTGAACCTGAA-ATAGAGAAAAATGGAACACCTGCTTC 23553 Query 14386 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGC 14445 ||| || || || ||| || || ||||| || || ||||| || | ||||| | Sbjct 23552 ACCAGCAATAGCCTTGGCTAGCAGTGTCTTTCCGGTTCCTGGAGGACCAACAAGAAGAAC 23493 Query 14446 ACCACGTGGGATCCTGGCACCA 14467 ||| ||| ||||| |||||| Sbjct 23492 ACCCTTTGGAATCCTAGCACCA 23471 >seq200694 Length=3324 Score = 100 bits (110), Expect = 4e-16 Identities = 196/283 (69%), Gaps = 10/283 (4%) Strand=Plus/Plus Query 11925 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAGTCA 11984 |||||| ||||| | || || |||| || ||| ||| ||||||||||||||||| ||| Sbjct 1804 AATTACAGAGAAGCATACGGGATCTTCGCCTGCAATGGCATTCTCTTCAACCACGAATCA 1863 Query 11985 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-CGA-TGGTA--TC-AAACAAA 12039 || || | || | ||||||||| |||||||| ||| |||| || || |||| Sbjct 1864 CCACGGAGAGGTGAAAACTTCGTGACACGTAAGATCACACGAGCGGTAGGTCGAATCAAA 1923 Query 12040 TCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGG 12099 || | | |||| || | || ||||||||| | | || || ||||||| Sbjct 1924 --GTAGGGTTACAGAGCAAGCTGTTT---TTGGGGAACTTACAGGCGTCAAGAGACTGGG 1978 Query 12100 GACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACG 12159 | ||| ||||| |||||||| |||||||| | || || || || ||||||||| Sbjct 1979 GGTTCGCCGGAGACTACGTTGAAGCAATGTGGCTGATGCTACAGCAGGAGAAGGCGGACG 2038 Query 12160 AATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTT 12202 | || || || ||||||| ||| | ||| | || |||||| Sbjct 2039 ACTACGTGGTGGCGACGGAGGAATCGCACACGGTGGAGGAGTT 2081 >seq46817 Length=7747 Score = 100 bits (110), Expect = 4e-16 Identities = 196/283 (69%), Gaps = 10/283 (4%) Strand=Plus/Minus Query 11925 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAGTCA 11984 |||||| ||||| | || || |||| || ||| ||| ||||||||||||||||| ||| Sbjct 7251 AATTACAGAGAAGCATACGGGATCTTCGCCTGCAATGGCATTCTCTTCAACCACGAATCA 7192 Query 11985 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-CGA-TGGTA--TC-AAACAAA 12039 || || | || | ||||||||| |||||||| ||| |||| || || |||| Sbjct 7191 CCACGGAGAGGTGAAAACTTCGTGACACGTAAGATCACACGAGCGGTAGGTCGAATCAAA 7132 Query 12040 TCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGG 12099 || | | |||| || | || ||||||||| | | || || ||||||| Sbjct 7131 --GTAGGGTTACAGAGCAAGCTGTTT---TTGGGGAACTTACAGGCGTCAAGAGACTGGG 7077 Query 12100 GACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACG 12159 | ||| ||||| |||||||| |||||||| | || || || || ||||||||| Sbjct 7076 GGTTCGCCGGAGACTACGTTGAAGCAATGTGGCTGATGCTACAGCAGGAGAAGGCGGACG 7017 Query 12160 AATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTT 12202 | || || || ||||||| ||| | ||| | || |||||| Sbjct 7016 ACTACGTGGTGGCGACGGAGGAATCGCACACGGTGGAGGAGTT 6974 >seq27346 Length=4931 Score = 100 bits (110), Expect = 4e-16 Identities = 196/283 (69%), Gaps = 10/283 (4%) Strand=Plus/Plus Query 11925 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAGTCA 11984 |||||| ||||| | || || |||| || ||| ||| ||||||||||||||||| ||| Sbjct 1990 AATTACAGAGAAGCATACGGGATCTTCGCCTGCAATGGCATTCTCTTCAACCACGAATCA 2049 Query 11985 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-CGA-TGGTA--TC-AAACAAA 12039 || || | || | ||||||||| |||||||| ||| |||| || || |||| Sbjct 2050 CCACGGAGAGGTGAAAACTTCGTGACACGTAAGATCACACGAGCGGTAGGTCGAATCAAA 2109 Query 12040 TCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGG 12099 || | | |||| || | || ||||||||| | | || || ||||||| Sbjct 2110 --GTAGGGTTACAGAGCAAGCTGTTT---TTGGGGAACTTACAGGCGTCAAGAGACTGGG 2164 Query 12100 GACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACG 12159 | ||| ||||| |||||||| |||||||| | || || || || ||||||||| Sbjct 2165 GGTTCGCCGGAGACTACGTTGAAGCAATGTGGCTGATGCTACAGCAGGAGAAGGCGGACG 2224 Query 12160 AATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTT 12202 | || || || ||||||| ||| | ||| | || |||||| Sbjct 2225 ACTACGTGGTGGCGACGGAGGAATCGCACACGGTGGAGGAGTT 2267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616436301477000