Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq106419 138 1e-27 seq200694 95.1 1e-14 seq46817 95.1 1e-14 seq27346 95.1 1e-14 seq73953 84.2 3e-11 seq49990 84.2 3e-11 >seq106419 Length=70059 Score = 138 bits (152), Expect = 1e-27 Identities = 287/418 (69%), Gaps = 16/418 (4%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9614 ||||| || || | || || || || || | |||| |||||| |||||| || ||| Sbjct 23842 TCAAGAATGTCTGCACGGTTGGTAGCTGCAACCACAATAATACCAGTGTTTCCTT--CAA 23785 Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT---CGCTG 9671 | |||||||| ||||||||||| ||||| | |||||||| | ||||||||| | || Sbjct 23784 AGCCATCCATTTCTGTCAAAAGCTGGTTCAGGGTTTGTTCTCTTTCATCATTACCCCCTC 23725 Query 9672 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 || ||||| | | |||| | || || |||||||| ||||||| || ||||| | Sbjct 23724 CAAT---ACCAGTCCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAATACGATAC 23668 Query 9732 ATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTT--GGCGCCCACACC 9789 | || ||| || || || || ||||| | || || ||| ||| || ||||| Sbjct 23667 AAGGGGCATTCTCCTTGGCCTTTTTGAAAAGATCTC-TA-ACTCTTGAGGCACCAACACC 23610 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 9848 |||||||||||| ||||| | || | ||| || | || || || ||| | ||||| Sbjct 23609 AACAAACATCTCAACAAACTCTGAACCTGAA-ATAGAGAAAAATGGAACACCTGCTTCAC 23551 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9908 | ||||| || ||| || || ||||| || || ||||| ||| | || || ||| Sbjct 23550 CAGCAATAGCCTTGGCTAGCAGTGTCTTTCCGGTTCCTGGAGGACCAACAAGAAGAACAC 23491 Query 9909 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 | ||||||| | || ||| || | | ||||| || | ||| ||||| || || Sbjct 23490 CCTTTGGAATCCTAGCACCAACAGCAGTGAACCTCTCTGGCTTCTTCAGAAACTCTAC 23433 >seq200694 Length=3324 Score = 95.1 bits (104), Expect = 1e-14 Identities = 182/260 (70%), Gaps = 14/260 (5%) Strand=Plus/Plus Query 7361 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 7420 |||||| | || | ||||| | || || ||| || || ||||||||||| |||||| Sbjct 1804 AATTACAGAGAAGCATACGGGATCTTCGCCTGCAATGGCATTCTCTTCAACCACGAATCA 1863 Query 7421 CCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTAC-CGAG-GGTA--TC-AAACAAA 7475 || | |||||| | |||| || ||| ||||| || |||| |||| || || |||| Sbjct 1864 CCACGGAGAGGTGAAAACTTCGTGACACGTAAGATCACACGAGCGGTAGGTCGAATCAAA 1923 Query 7476 TCATGAAGGGTGA-AAAG-GAGTTCATTGAATTGGGTAACATAAACGCGGCGAGAGATTG 7533 | ||||| | | || || | || ||||| ||| || | ||| | ||||| || Sbjct 1924 ----GTAGGGTTACAGAGCAAGCTGTTT---TTGGGGAACTTACAGGCGTCAAGAGACTG 1976 Query 7534 GGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGA 7593 ||| ||| ||||| |||||||| |||||||| ||||| || || ||| | || || Sbjct 1977 GGGGTTCGCCGGAGACTACGTTGAAGCAATGTGGCTGATGCTACAGCAGGAGAAGGCGGA 2036 Query 7594 CGAATATGTAGTAGCAACGG 7613 ||| || || || || |||| Sbjct 2037 CGACTACGTGGTGGCGACGG 2056 >seq46817 Length=7747 Score = 95.1 bits (104), Expect = 1e-14 Identities = 182/260 (70%), Gaps = 14/260 (5%) Strand=Plus/Minus Query 7361 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 7420 |||||| | || | ||||| | || || ||| || || ||||||||||| |||||| Sbjct 7251 AATTACAGAGAAGCATACGGGATCTTCGCCTGCAATGGCATTCTCTTCAACCACGAATCA 7192 Query 7421 CCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTAC-CGAG-GGTA--TC-AAACAAA 7475 || | |||||| | |||| || ||| ||||| || |||| |||| || || |||| Sbjct 7191 CCACGGAGAGGTGAAAACTTCGTGACACGTAAGATCACACGAGCGGTAGGTCGAATCAAA 7132 Query 7476 TCATGAAGGGTGA-AAAG-GAGTTCATTGAATTGGGTAACATAAACGCGGCGAGAGATTG 7533 | ||||| | | || || | || ||||| ||| || | ||| | ||||| || Sbjct 7131 ----GTAGGGTTACAGAGCAAGCTGTTT---TTGGGGAACTTACAGGCGTCAAGAGACTG 7079 Query 7534 GGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGA 7593 ||| ||| ||||| |||||||| |||||||| ||||| || || ||| | || || Sbjct 7078 GGGGTTCGCCGGAGACTACGTTGAAGCAATGTGGCTGATGCTACAGCAGGAGAAGGCGGA 7019 Query 7594 CGAATATGTAGTAGCAACGG 7613 ||| || || || || |||| Sbjct 7018 CGACTACGTGGTGGCGACGG 6999 >seq27346 Length=4931 Score = 95.1 bits (104), Expect = 1e-14 Identities = 182/260 (70%), Gaps = 14/260 (5%) Strand=Plus/Plus Query 7361 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 7420 |||||| | || | ||||| | || || ||| || || ||||||||||| |||||| Sbjct 1990 AATTACAGAGAAGCATACGGGATCTTCGCCTGCAATGGCATTCTCTTCAACCACGAATCA 2049 Query 7421 CCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTAC-CGAG-GGTA--TC-AAACAAA 7475 || | |||||| | |||| || ||| ||||| || |||| |||| || || |||| Sbjct 2050 CCACGGAGAGGTGAAAACTTCGTGACACGTAAGATCACACGAGCGGTAGGTCGAATCAAA 2109 Query 7476 TCATGAAGGGTGA-AAAG-GAGTTCATTGAATTGGGTAACATAAACGCGGCGAGAGATTG 7533 | ||||| | | || || | || ||||| ||| || | ||| | ||||| || Sbjct 2110 ----GTAGGGTTACAGAGCAAGCTGTTT---TTGGGGAACTTACAGGCGTCAAGAGACTG 2162 Query 7534 GGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGA 7593 ||| ||| ||||| |||||||| |||||||| ||||| || || ||| | || || Sbjct 2163 GGGGTTCGCCGGAGACTACGTTGAAGCAATGTGGCTGATGCTACAGCAGGAGAAGGCGGA 2222 Query 7594 CGAATATGTAGTAGCAACGG 7613 ||| || || || || |||| Sbjct 2223 CGACTACGTGGTGGCGACGG 2242 >seq73953 Length=35596 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| || ||||| || ||||| | ||| |||||||||||||||| ||||||||| | Sbjct 24256 AAACCCGTCCATTTCCGTCAACAATTGATTAATAGTTTGTTCCCTTTCATCATTTCCGCC 24315 Query 9673 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | | ||| || | | |||| |||| || ||||| ||||||||||| || || || || Sbjct 24316 CCCAAGACCCGCCCCTCTTTGCCTTCCAACCGCATCTATCTCATCAATAAACACTATACA 24375 Query 9733 TGGT 9736 ||| Sbjct 24376 AGGT 24379 >seq49990 Length=8241 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| || ||||| || ||||| | ||| |||||||||||||||| ||||||||| | Sbjct 4171 AAACCCGTCCATTTCCGTCAACAATTGATTAATAGTTTGTTCCCTTTCATCATTTCCGCC 4112 Query 9673 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | | ||| || | | |||| |||| || ||||| ||||||||||| || || || || Sbjct 4111 CCCAAGACCCGCCCCTCTTTGCCTTCCAACCGCATCTATCTCATCAATAAACACTATACA 4052 Query 9733 TGGT 9736 ||| Sbjct 4051 AGGT 4048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581375591733000