Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq138370 167 3e-36 seq31517 159 4e-34 seq40372 109 6e-19 seq38170 104 3e-17 seq157746 84.2 2e-11 >seq138370 Length=13449 Score = 167 bits (184), Expect = 3e-36 Identities = 186/245 (76%), Gaps = 5/245 (2%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || ||||| | ||||| ||||| |||||| | ||||| || || Sbjct 5294 AATGCAGATTTTCGTTAAGACATTAACCGGAAAGACGATTACTTTGGAGGTGGAA--AGC 5351 Query 27465 T--GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | |||| ||||| ||| ||||||| || |||||||| ||||||||||| || || ||| Sbjct 5352 TCGGATACCATTGATAATGTGAAGGCGAAGATTCAGGATAAGGAGGGAATCCCACCGGAC 5411 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||| | | || ||||||||||| ||| | || |||| | || || || || ||| Sbjct 5412 CAGCAGAGGTTGATCTTTGCTGGTAAACAATTGGAAGATGGGAGGACACTTGCTGATTAT 5471 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAA 27642 ||| |||| || || |||||||||||||| || | |||||||| ||||| |||| | Sbjct 5472 AATATCCAGAAAGAGTCCACTCTTCATCTTGTTCTTCGTCTTCGTGGTGG-TGGGTTTTA 5530 Query 27643 AGTTT 27647 ||||| Sbjct 5531 AGTTT 5535 Score = 141 bits (156), Expect = 1e-28 Identities = 159/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| || ||||| ||||| || |||||||| || ||| || | Sbjct 4611 ATGCAAATCTTTGTTAAGACCCTCACCGGAAAGACAATCACTCTTGAAGTCGAG--AGTT 4668 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | || | || | ||||| || || || ||||| || || ||||| ||||||| Sbjct 4669 CCGACACAATAGACAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATTCCACCAGACC 4728 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 |||| | || || ||||| || ||||| || || || | ||||| |||| || || | Sbjct 4729 AGCAAAGACTTATCTTTGCCGGAAAGCAGCTTGAAGACGGCCGTACTTTAGCCGATTACA 4788 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 || ||||||| |||||||| |||||||| || Sbjct 4789 ATATCCAAAAAGAATCCACCCTTCATCTTGT 4819 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || ||||| || || || ||| | || ||||| | Sbjct 4839 ATGCAGATTTTCGTTAAGACCCTCACCGGAAAAACCATCACTTTGGAAGTTGAAAGCTCT 4898 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | || ||||| || || ||||| || || || || |||||||| Sbjct 4899 GACACCATTGATAACGTCAAAGCTAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAA 4958 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || ||||| || || || ||||||||||| | || ||||| || || || || Sbjct 4959 CAAAGGCTCATTTTCGCCGGAAAACAACTCGAGGACGGCCGAACCCTGGCTGATTACAAC 5018 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || |||||||| ||| | ||| | |||||||| ||||| Sbjct 5019 ATCCAGAAAGAGTCCACTCTCCATTTGGTCCTCCGTCTTCGTGGTGG 5065 >seq31517 Length=16670 Score = 159 bits (176), Expect = 4e-34 Identities = 174/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || ||||| || ||| | ||||| ||| || | Sbjct 3479 ATGCAGATCTTTGTGAAGACTCTGACTGGGAAGACCATCACTTTGGAGGTGGAG--AGTT 3536 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 |||| |||| ||| | ||||| || |||||||| ||||| || || || || || | Sbjct 3537 CGGATACTATTGACAATGTCAAGGCAAAGATTCAGGATAAGGAAGGGATCCCACCGGATC 3596 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 ||||| | | || |||||||||||||| |||||||| | |||||||| || ||||| | Sbjct 3597 AGCAGAGGTTGATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGTACCCTTGCTGACTACA 3656 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || |||||||| || ||||| | || | |||||||| ||||| Sbjct 3657 ATATTCAGAAGGAATCAACCCTTCACTTGGTTCTTCGTCTTCGTGGTGG 3705 Score = 145 bits (160), Expect = 9e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||| || || ||||| ||||| || || | || || ||| | Sbjct 2567 ATGCAAATCTTCGTCAAAACCCTCACCGGAAAGACAATCACCTTGGAAGTCGAGAGTTCT 2626 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || |||| || || || ||||||||||| ||||| |||||||||||| Sbjct 2627 GACACTATCGATAACGTGAAAGCCAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCAG 2686 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || || || ||||||||||| || | |||||| ||||| || || ||| Sbjct 2687 CAGAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGTCGTACTCTAGCCGATTACAAT 2746 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 ||||||||||||| || ||||| Sbjct 2747 ATCCAAAAGGAATCGACCCTTCA 2769 Score = 145 bits (160), Expect = 9e-30 Identities = 157/206 (76%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | ||||| ||||| || ||| | ||||||||| || | Sbjct 3023 ATGCAGATCTTCGTTAAGACATTGACCGGAAAGACCATCACTTTGGAGGTTGAG--AGTT 3080 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | ||| | ||| | ||||| || || || || |||||||| || || ||||||| Sbjct 3081 CAGACACCATAGACAATGTTAAGGCAAAGATCCAAGATAAGGAGGGTATCCCACCAGACC 3140 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 ||||| | |||| |||||||||||||| || || |||| | || || || ||||| | Sbjct 3141 AGCAGAGGTTAATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACACTTGCTGACTACA 3200 Query 27584 ATGTCCAAAAGGAATCCACTCTTCAT 27609 || | || |||||||||||||||||| Sbjct 3201 ATATTCAGAAGGAATCCACTCTTCAT 3226 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || || || ||||| |||||||| ||||| ||| | Sbjct 2339 ATGCAGATCTTCGTGAAAACCCTAACTGGAAAGACCATTACTCTCGAGGTCGAGAGCTCT 2398 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | ||||| ||||| || || ||||| |||||||||||||| ||| Sbjct 2399 GATACAATTGATAACGTCAAGGCCAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 2458 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || ||||| || |||||||||||||| | ||||| | || || || || Sbjct 2459 CAAAGATTGATCTTTGCCGGAAAGCAACTCGAGGACGGCCGTACTTTGGCCGATTACAAC 2518 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||||| || ||||| || || || ||| Sbjct 2519 ATCCAAAAAGAGTCCACACTCCACCTTGTC 2548 Score = 132 bits (146), Expect = 5e-26 Identities = 154/206 (75%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| || || || ||||| || ||| | || ||||| || Sbjct 2794 AATGCAAATCTTCGTTAAGACCCTGACTGGAAAGACCATAACTTTGGAAGTTGA--AAGC 2851 Query 27465 T--GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | |||| ||||| || |||| || || || || || ||||| || ||||| |||||| Sbjct 2852 TCGGATACCATTGATAACGTGAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGAC 2911 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||| | | || ||||| || || || || || || | ||||| ||||| |||||| Sbjct 2912 CAGCAGAGGTTGATCTTTGCCGGCAAACAGCTTGAAGACGGCCGTACTCTAGCCGACTAT 2971 Query 27583 AATGTCCAAAAGGAATCCACTCTTCA 27608 || |||| |||||||| || ||||| Sbjct 2972 AACATCCAGAAGGAATCAACCCTTCA 2997 >seq40372 Length=8222 Score = 109 bits (120), Expect = 6e-19 Identities = 151/210 (72%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || ||||| || || || |||||||| ||| | ||| | Sbjct 1485 ATGCAGATCTTCGTGAAAACCCTTACTGGAAAAACCATTACTCTGGAG-TAGAGAGTTCT 1427 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | || || ||||| || ||||| || || ||||||||||| || Sbjct 1426 GATACAATCGATAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAA 1367 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || || || || || || || || || | | |||||||| || ||||| Sbjct 1366 CAACGGCTCATCTTCGCCGGGAAACAGCTAAGAGACGGCAGAACCCTAGCTGATTATAAC 1307 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 |||| |||||||| |||||||| || ||| Sbjct 1306 ATCCAGAAGGAATCAACTCTTCACCTCGTC 1277 Score = 100 bits (110), Expect = 3e-16 Identities = 151/209 (72%), Gaps = 7/209 (3%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || | || || || || ||||| | |||||||| | Sbjct 1029 ATGCAGATCTTCGTGAA-ACATTAACGGGAAAAAC-ATTACGTTGGAGGTTGAAAGTTCT 972 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || || ||||||| || ||||||||||||||||| ||||||||||| ||| Sbjct 971 GATACAATAT--AACGTGAAGGCCAAGATTCAGGACAAGGAGGGTATTCCTCCAGATCAG 914 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || || || || || | || |||| | | |||||| || || ||| Sbjct 913 CAGCGTTTGATCTTCGCCGGCAAACAGTTGGAAGATG--CAGAACCTAGCGGATTACAAT 856 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | ||||||||||| || | ||||| || Sbjct 855 AT-CAAAAGGAATCTACGTTGCATCTGGT 828 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/224 (71%), Gaps = 9/224 (4%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||||||||| || ||||| || || | ||||||||| || | Sbjct 808 ATGCAGATTTTTGTCAAGACATGAGAAGGGAAGACAATCACGTTGGAGGTTGAG--AGCT 751 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | |||| ||| |||| || ||||||||||| || | || ||||| || || | Sbjct 750 CAGACACTATTGATAATGTGAA-GCCAAAATTCAGGATAA--AAGGGATTCCACCTGATC 694 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 |||| | | || |||||||| ||||| || || |||| | | || |||| || |||| Sbjct 693 AGCACGTTTTGATCTTTGCTGGGAAGCAGCTTGAAGATGGTAGAACTTTAGCTGATTATA 634 Query 27584 ATGTCCAAAAGGAATCCACTCT-TCATCTAGTCTTGCGTCTTCG 27626 || | || |||| ||| ||||| || || || |||||||||| Sbjct 633 ATATTCAGAAGG-ATCTACTCTGCCACCTTGTGCTGCGTCTTCG 591 >seq38170 Length=7308 Score = 104 bits (114), Expect = 3e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || || | || || || || || |||||||| || | Sbjct 6672 ATGCAGATCTTCGTGAAAACCCTAACTGAAAAAACCATAACCCTAGAGGTTGAATCCTCT 6613 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || || || || || ||||| || || || || || ||||| Sbjct 6612 GACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCGGACCAA 6553 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||| || || || ||||| | | | |||||| | ||||| || Sbjct 6552 CAACGTCTCATCTTTGCCGGAAAACAGCTCGAAGGCGGCAGAACCCTATCCGACTACAAC 6493 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 |||| ||||||||||| || || || ||| Sbjct 6492 ATCCAGAAGGAATCCACCCTCCACCTTGTC 6463 >seq157746 Length=3754 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || ||||| ||||| || ||||| ||||||||| || Sbjct 284 ATGCAGATCTTTGTGAAAACCCTAACCGGGAAGACCATCACTCTCGAGGTTGAGAGCAGT 343 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | ||| | || |||| ||||||||||||||| || Sbjct 344 GACACCATCGACAATGTCAAAGCTAGAATTCAGGACAAGGAAGG 387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568467049854000