Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq138370 129 4e-25 seq38170 98.7 6e-16 >seq138370 Length=13449 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||||||||||||| ||| || || ||||| ||||| | Sbjct 5065 CCACCACGAAGACGGAGGACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCC 5006 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| |||| || |||||||| ||||| || || | | |||||||| || || Sbjct 5005 AGGGTTCGGCCGTCCTCGAGTTGTTTTCCGGCGAAAATGAGCCTTTGTTGGTCTGGGGGG 4946 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| |||| || | ||| ||| || ||| ||||| ||| || || Sbjct 4945 ATGCCTTCTTTGTCTTGGATC-TTAGCTTTGACGTTATCAATGGTGTCAGAGCTTTCAAC 4887 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| ||||| | || || || ||||||||||| Sbjct 4886 TTCCAAAGTGATGGTTTTTCCGGTGAGGGTCTTAACGAAAATCTGCAT 4839 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | ||| |||||| ||| || || || |||||||| | | Sbjct 5521 CCACCACGAAGACGAAGAACAAGATGAAGAGTGGACTCTTTCTGGATATTATAATCAGCA 5462 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| | | | ||||| | ||||||||| ||||| || || | ||| |||||||| || Sbjct 5461 AGTGTCCTCCCATCTTCCAATTGTTTACCAGCAAAGATCAACCTCTGCTGGTCCGGTGGG 5402 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | ||||||||| || ||||| | || || || ||| || || ||| ||||| Sbjct 5401 ATTCCCTCCTTATCCTGAATCTTC-GCCTTCACATTATCAATGGTATCCGAGCTTTCCAC 5343 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || ||||| || |||||||| || || || ||||||||||| Sbjct 5342 CTCCAAAGTAATCGTCTTTCCGGTTAATGTCTTAACGAAAATCTGCAT 5295 Score = 109 bits (120), Expect = 3e-19 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG-- 34537 || || || || || | ||| | ||||| || ||||| || ||||| ||||| | Sbjct 5293 CCTCCCCTTAGCCGAAGCACAAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCAGCC 5234 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 |||||| || | ||||| || ||||| || ||||| || | | |||||| || || | Sbjct 5233 AAAGTG--CGACCATCTTCCAGCTGTTTTCCAGCAAAGATAAGCCTCTGTTGATCTGGTG 5176 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCC 34656 | | ||| ||||| ||| |||||| | ||| ||| || ||| ||||| |||||| Sbjct 5175 GGATTCCTTCCTTATCTTGGATCTTA-GCTTTCACGTTATCAATGGTGTCCGAGCTCTCG 5117 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| || ||||| || ||||| || || || || ||||||||||| Sbjct 5116 ACTTCCAAAGTAATCGTCTTCCCGGTCAATGTCTTAACGAAAATCTGCAT 5067 >seq38170 Length=7308 Score = 98.7 bits (108), Expect = 6e-16 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||| ||||| || ||||| || || || || |||| || |||| || ||| Sbjct 6470 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTTCTGCCGCCTTCGAGCTGT 6529 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || |||||||| || | ||| ||||||||||| || | || || |||||| |||| || Sbjct 6530 TTTCCGGCAAAGATGAGACGTTGTTGGTCCGGTGGGATACCTTCTTTGTCTTGGATC-TT 6588 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | ||| || | || ||||| | || || || | |||||| ||||| | || Sbjct 6589 GGCTTTGACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTTTCAGT 6648 Query 34683 TAACGTTTTCACAAAAATCTGCATGTTG 34710 || |||||||| || |||||||| ||| Sbjct 6649 TAGGGTTTTCACGAAGATCTGCATCTTG 6676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313737766547975