Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq138370 118 9e-22 seq38170 100 2e-16 seq40372 98.7 9e-16 seq31517 95.1 1e-14 >seq138370 Length=13449 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||| || | || ||| | ||||| ||| || Sbjct 4839 ATGCAGATTTTCGTTAAGACCCTCACCGGAAAAACCATCACTTTGGAAGTTGAAAGCTCT 4898 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || || ||||||||||||||||| || || || ||| Sbjct 4899 GACACCATTGATAACGTCAAAGCTAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAA 4958 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | |||||| |||||| | || ||| | ||| | | ||||||||| Sbjct 4959 CAAAGGCTCATTTTCGCCGGAAAACAACTCGAGGACGGCCGAACCCTGGCTGATTACAAC 5018 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | |||||||| | ||| | || ||||| || Sbjct 5019 ATCCAGAAAGAGTCCACTCTCCATTTGGTCCTCCGTCTTCGTGGTGGTAT 5068 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || ||||| ||| | || ||||||||||| || ||| Sbjct 4611 ATGCAAATCTTTGTTAAGACCCTCACCGGAAAGACAATCACTCTTGAAGTCGAGAGTTCC 4670 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || ||||||||||||||||| ||||| || || Sbjct 4671 GACACAATAGACAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATTCCACCAGACCAG 4730 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||||| || || | |||||| | || | |||||||||| Sbjct 4731 CAAAGACTTATCTTTGCCGGAAAGCAGCTTGAAGACGGCCGTACTTTAGCCGATTACAAT 4790 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || ||||| || || ||| | ||| | ||| Sbjct 4791 ATCCAAAAAGAATCCACCCTTCATCTTGTT 4820 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||| ||| | |||||| | ||||| || || Sbjct 5067 ATGCAGATTTTCGTTAAGACATTGACCGGGAAGACGATTACTTTGGAAGTCGAGAGCTCG 5126 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || || ||||| || ||||| || ||||| |||||| Sbjct 5127 GACACCATTGATAACGTGAAAGCTAAGATCCAAGATAAGGAAGGAATCCCACCAGATCAA 5186 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || ||||| ||||||| || || | | ||||||||| Sbjct 5187 CAGAGGCTTATCTTTGCTGGAAAACAGCTGGAAGATGGTCGCACTTTGGCTGATTACAAC 5246 Query 27168 ATTCAAAAGGAGTCGACC 27185 || || ||||| || ||| Sbjct 5247 ATCCAGAAGGAATCTACC 5264 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || | ||||| ||| | |||||| | || |||||| || Sbjct 5295 ATGCAGATTTTCGTTAAGACATTAACCGGAAAGACGATTACTTTGGAGGTGGAAAGCTCG 5354 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || ||||| || || || || || ||||| || || Sbjct 5355 GATACCATTGATAATGTGAAGGCGAAGATTCAGGATAAGGAGGGAATCCCACCGGACCAG 5414 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || |||||||||||||| | ||| || | ||||| || Sbjct 5415 CAGAGGTTGATCTTTGCTGGTAAACAATTGGAAGATGGGAGGACACTTGCTGATTATAAT 5474 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || || ||||| || | ||| | ||| | ||| | || ||||| Sbjct 5475 ATCCAGAAAGAGTCCACTCTTCATCTTGTTCTTCGTCTTCGTGGTGG 5521 >seq38170 Length=7308 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || | || | || || || || || ||| | || Sbjct 6672 ATGCAGATCTTCGTGAAAACCCTAACTGAAAAAACCATAACCCTAGAGGTTGAATCCTCT 6613 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| || || |||||||||||||| || ||||| || ||| Sbjct 6612 GACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCGGACCAA 6553 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||||| ||||| | |||| | | ||| | ||||| |||||| Sbjct 6552 CAACGTCTCATCTTTGCCGGAAAACAGCTCGAAGGCGGCAGAACCCTATCCGACTACAAC 6493 Query 27168 ATTCAAAAGGAGTCGACC 27185 || || ||||| || ||| Sbjct 6492 ATCCAGAAGGAATCCACC 6475 >seq40372 Length=8222 Score = 98.7 bits (108), Expect = 9e-16 Identities = 112/147 (76%), Gaps = 5/147 (3%) Strand=Plus/Minus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || ||||| ||||| || || || || || ||||| |||||||| || | |||||||||| Sbjct 949 AAGATTCAGGACAAGGAGGGTATTCCTCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAA 890 Query 27132 CAATTGGAAGACAGTTC-GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACA 27190 || |||||||| | | || | | | |||||||| | ||||||||| || || || || Sbjct 889 CAGTTGGAAGA---TGCAGAACCTAGCGGATTACAATA-TCAAAAGGAATCTACGTTGCA 834 Query 27191 TTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | ||||| || | ||| |||| ||||| Sbjct 833 TCTGGTTCTGAGATTGAGGGGAGGCAT 807 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || || | |||||||| || || || || Sbjct 1485 ATGCAGATCTTCGTGAAAACCCTTACTGGAAAAACCATTACTCTGGA-GTAGAGAGTTCT 1427 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| ||||| ||||||||||||||||| || || |||||| Sbjct 1426 GATACAATCGATAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAA 1367 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | |||||| ||||| | |||| | ||| | | ||||| ||| Sbjct 1366 CAACGGCTCATCTTCGCCGGGAAACAGCTAAGAGACGGCAGAACCCTAGCTGATTATAAC 1307 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || ||||| || || Sbjct 1306 ATCCAGAAGGAATCAAC 1290 >seq31517 Length=16670 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||| || ||| | || ||| | ||||| ||| || Sbjct 2795 ATGCAAATCTTCGTTAAGACCCTGACTGGAAAGACCATAACTTTGGAAGTTGAAAGCTCG 2854 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || || ||||| || ||||| || || || || || Sbjct 2855 GATACCATTGATAACGTGAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAG 2914 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||||||||| | |||||| | || | |||| || ||| Sbjct 2915 CAGAGGTTGATCTTTGCCGGCAAACAGCTTGAAGACGGCCGTACTCTAGCCGACTATAAC 2974 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || ||| | || |||||| | || ||| | ||||| || Sbjct 2975 ATCCAGAAGGAATCAACCCTTCACTTGGTTCTTCGATTGAGAGGTGGTAT 3024 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| || ||| | || ||| | || || || || Sbjct 3251 ATGCAGATCTTTGTTAAGACGTTGACTGGAAAGACAATCACTTTGGAGGTTGAGAGCTCT 3310 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || ||| || |||||||| ||||| || ||||| ||||| Sbjct 3311 GATACTATCGATAACGTTAAGGCAAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAG 3370 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || | || || || || || | || |||||| Sbjct 3371 CAGAGATTGATCTTTGCAGGTAAGCAGCTCGAGGATGGTCGTACGCTTGCTGACTACAAC 3430 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| ||||| |||| |||||| | || || | ||||| || Sbjct 3431 ATTCAGAAGGAATCGACTCTACACTTGGTTCTTCGATTAAGAGGTGGGAT 3480 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | |||||||| || || || || Sbjct 2339 ATGCAGATCTTCGTGAAAACCCTAACTGGAAAGACCATTACTCTCGAGGTCGAGAGCTCT 2398 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| ||||| ||||| || ||||| || || || ||||| Sbjct 2399 GATACAATTGATAACGTCAAGGCCAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 2458 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||||| || ||| | || ||| | || | ||||||||||| Sbjct 2459 CAAAGATTGATCTTTGCCGGAAAGCAACTCGAGGACGGCCGTACTTTGGCCGATTACAAC 2518 Query 27168 ATTCAAAAGGAGTCGAC 27184 || ||||| ||||| || Sbjct 2519 ATCCAAAAAGAGTCCAC 2535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433550995544975