Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_028768.1 Length=49714 Score E Sequences producing significant alignments: (Bits) Value seq233357 80.6 8e-11 seq211058 80.6 8e-11 seq144798 80.6 8e-11 seq99321 80.6 8e-11 seq57257 80.6 8e-11 seq49801 80.6 8e-11 seq12457 80.6 8e-11 >seq233357 Length=8058 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 36094 AGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCT-ACCTGACTGCGCTACA 36152 |||||||||||||| ||||||||| |||||| |||||||||| ||| |||||||||||| Sbjct 5922 AGGATTCGAACCTACGACCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACA 5863 Query 36153 C 36153 | Sbjct 5862 C 5862 >seq211058 Length=9520 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 36094 AGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCT-ACCTGACTGCGCTACA 36152 |||||||||||||| ||||||||| |||||| |||||||||| ||| |||||||||||| Sbjct 5724 AGGATTCGAACCTACGACCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACA 5665 Query 36153 C 36153 | Sbjct 5664 C 5664 >seq144798 Length=7859 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 36094 AGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCT-ACCTGACTGCGCTACA 36152 |||||||||||||| ||||||||| |||||| |||||||||| ||| |||||||||||| Sbjct 2573 AGGATTCGAACCTACGACCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACA 2514 Query 36153 C 36153 | Sbjct 2513 C 2513 >seq99321 Length=1664 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 36094 AGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCT-ACCTGACTGCGCTACA 36152 |||||||||||||| ||||||||| |||||| |||||||||| ||| |||||||||||| Sbjct 503 AGGATTCGAACCTACGACCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACA 444 Query 36153 C 36153 | Sbjct 443 C 443 >seq57257 Length=8262 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Plus Query 36094 AGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCT-ACCTGACTGCGCTACA 36152 |||||||||||||| ||||||||| |||||| |||||||||| ||| |||||||||||| Sbjct 5122 AGGATTCGAACCTACGACCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACA 5181 Query 36153 C 36153 | Sbjct 5182 C 5182 >seq49801 Length=5399 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 36094 AGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCT-ACCTGACTGCGCTACA 36152 |||||||||||||| ||||||||| |||||| |||||||||| ||| |||||||||||| Sbjct 1705 AGGATTCGAACCTACGACCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACA 1646 Query 36153 C 36153 | Sbjct 1645 C 1645 >seq12457 Length=7091 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Plus Query 36094 AGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCT-ACCTGACTGCGCTACA 36152 |||||||||||||| ||||||||| |||||| |||||||||| ||| |||||||||||| Sbjct 2625 AGGATTCGAACCTACGACCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACA 2684 Query 36153 C 36153 | Sbjct 2685 C 2685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158475091075400