Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq138370 93.3 3e-14 seq31517 89.7 4e-13 >seq138370 Length=13449 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || || || || || || ||| || || | || || |||||| | Sbjct 4839 ATGCAGATTTTCGTTAAGACCCTCACCGGAAAAACCATCACTTTGGAAGTTGAAAGCTCT 4898 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | || |||||| || || ||||||||||| | || || | Sbjct 4899 GACACCATTGATAAC--GTCAAAGCTAAGATCCAAGACAAAGAAGGCATCCCCCCAGACC 4956 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| || | ||||| |||||||||||| | || |||| || | | || | ||||||| Sbjct 4957 AACAAAGGCTCATTTTCGCCGGAAAACAACTCGAGGACGGCCGAACCCTGGCTGATTACA 5016 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| |||||| |||| | |||||||| | ||| | ||||| || Sbjct 5017 ACATCCAGAAAGAGTCCACTCTCCATTTGGTCCTCCGTCTTCGTGGTGG 5065 >seq31517 Length=16670 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 10/197 (5%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || |||||||| || ||||| || ||||| | || ||||| ||| | Sbjct 2339 ATGCAGATCTTCGTGAAAACCCTAACTGGAAAGACCATTACTCTCGAGGTCGAGAGCTCT 2398 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || |||||| | ||||| ||||| || || ||||| |||| | Sbjct 2399 GA-----TACAATTGATAACGTCAAGGCCAAAATCCAAGATAAGGAAGGAATTCCTCCAG 2453 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||| | || || ||||||||||| ||| | || |||| || | ||| |||||| Sbjct 2454 ATCAGCAAAGATTGATCTTTGCCGGAAAGCAACTCGAGGACGGCCGTACTTTGGCCGATT 2513 Query 27965 ACAACATCCAAAAAGAG 27981 ||||||||||||||||| Sbjct 2514 ACAACATCCAAAAAGAG 2530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354740941349025