Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq138370 134 9e-27 seq31517 131 1e-25 seq38170 113 3e-20 seq40372 86.0 4e-12 >seq138370 Length=13449 Score = 134 bits (148), Expect = 9e-27 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| |||||||| |||||||| |||||| | |||||||| | | Sbjct 4839 ATGCAGATTTTCGTTAAGACCCTCACCGGAAAAACCATCACTTTGGAAGTTGAAAGCTCT 4898 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | ||| || || ||||||||||| | || ||||| ||| Sbjct 4899 GACACCATTGATAACGTCAAAGCTAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAA 4958 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || || ||||| |||||||| || |||| || || | | ||||||||| Sbjct 4959 CAAAGGCTCATTTTCGCCGGAAAACAACTCGAGGACGGCCGAACCCTGGCTGATTACAAC 5018 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || ||||||||||| | ||||| || Sbjct 5019 ATCCAGAAAGAGTCCACTCTCCATTTGGT 5047 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || ||||| |||||||| ||||| || |||||||| ||||| || | Sbjct 4611 ATGCAAATCTTTGTTAAGACCCTCACCGGAAAGACAATCACTCTTGAAGTCGAGAGTTCC 4670 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||||||||| | || ||||| || Sbjct 4671 GACACAATAGACAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATTCCACCAGACCAG 4730 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || |||||||| || || || ||||||| || ||||||| ||||||||| Sbjct 4731 CAAAGACTTATCTTTGCCGGAAAGCAGCTTGAAGACGGCCGTACTTTAGCCGATTACAAT 4790 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| ||||| | ||| | ||| | || || ||||||| Sbjct 4791 ATCCAAAAAGAATCCACCCTTCATCTTGTTCTCAGATTAAGAGGAGG 4837 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| || | || || || ||||| ||| | ||||| || | || Sbjct 5067 ATGCAGATTTTCGTTAAGACATTGACCGGGAAGACGATTACTTTGGAAGTCGAGAGCTCG 5126 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | ||| || || || || ||||| | || ||||||||| Sbjct 5127 GACACCATTGATAACGTGAAAGCTAAGATCCAAGATAAGGAAGGAATCCCACCAGATCAA 5186 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || ||||| |||||||| | |||||||| | ||||||||| Sbjct 5187 CAGAGGCTTATCTTTGCTGGAAAACAGCTGGAAGATGGTCGCACTTTGGCTGATTACAAC 5246 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 5247 ATCCAGAAGGAATCTAC 5263 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||||||||| || | || ||||| ||||| ||| | || || || | | Sbjct 5294 AATGCAGATTTTCGTTAAGACATTAACCGGAAAGACGATTACTTTGGAGGTGGAAAGCTC 5353 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| || |||| ||| | || | || ||| || || || || | || || || | Sbjct 5354 GGATACCATTGATAATGTGAAGGC-GAAGATTCAGGATAAGGAGGGAATCCCACCGGACC 5412 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||| || |||||| ||||||| | | || | | ||||| | Sbjct 5413 AGCAGAGGTTGATCTTTGCTGGTAAACAATTGGAAGATGGGAGGACACTTGCTGATTATA 5472 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 | || || ||||||||||| | ||| | ||| Sbjct 5473 ATATCCAGAAAGAGTCCACTCTTCATCTTGTT 5504 >seq31517 Length=16670 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || ||||| || || |||||||| || || | | Sbjct 2339 ATGCAGATCTTCGTGAAAACCCTAACTGGAAAGACCATTACTCTCGAGGTCGAGAGCTCT 2398 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || ||||| || || ||||| | || |||||||| Sbjct 2399 GATACAATTGATAACGTCAAGGCCAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 2458 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || |||||||| || ||||| || |||| || ||||| | |||||||||| Sbjct 2459 CAAAGATTGATCTTTGCCGGAAAGCAACTCGAGGACGGCCGTACTTTGGCCGATTACAAC 2518 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||||||||||||| | || | || | || ||| ||||||| Sbjct 2519 ATCCAAAAAGAGTCCACACTCCACCTTGTCCTCAGATTGAGAGGAGG 2565 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||||||||| ||||| || ||||| | ||||| || | Sbjct 2567 ATGCAAATCTTCGTCAAAACCCTCACCGGAAAGACAATCACCTTGGAAGTCGAGAGTTCT 2626 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | ||| || || ||||| ||||| | || ||||| || Sbjct 2627 GACACTATCGATAACGTGAAAGCCAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCAG 2686 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || ||||| || ||||| ||||||| || ||| ||| ||||||||| Sbjct 2687 CAGAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGTCGTACTCTAGCCGATTACAAT 2746 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| || || || | || || || | |||||| |||||||| Sbjct 2747 ATCCAAAAGGAATCGACCCTTCACTTGGTCCTCAGGTTGAGAGGAGGA 2794 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || |||||||| ||||| || ||||| || || ||| | |||||||| | | Sbjct 2794 AATGCAAATCTTCGTTAAGACCCTGACTGGAAAGACCATAACTTTGGAAGTTGAAAGCTC 2853 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || |||| | | ||| || || || || |||||| | || ||||| || Sbjct 2854 GGATACCATTGATAACGTGAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCA 2913 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||||||||| || ||||||| || ||| ||| ||| || || Sbjct 2914 GCAGAGGTTGATCTTTGCCGGCAAACAGCTTGAAGACGGCCGTACTCTAGCCGACTATAA 2973 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || || || || | || || ||| | | ||| |||| || Sbjct 2974 CATCCAGAAGGAATCAACCCTTCACTTGGTTCTTCGATTGAGAGGTGG 3021 >seq38170 Length=7308 Score = 113 bits (124), Expect = 3e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||| || | |||||| || || || || ||||| ||| Sbjct 6675 AAGATGCAGATCTTCGTGAAAACCCTAACTGAAAAAACCATAACCCTAGAGGTTGAATCC 6616 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| | || | | |||||||||||| | || || || Sbjct 6615 TCTGACACCATCGACAATGTCAAAGCCAAGA-TCCAAGACAAAGAAGGTATCCCACCGGA 6557 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||| ||| | || |||||||| ||||| || |||| || | || || ||| || Sbjct 6556 CCAACAACGTCTCATCTTTGCCGGAAAACAGCTCGAAGGCGGCAGAACCCTATCCGACTA 6497 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || || ||||| Sbjct 6496 CAACATCCAGAAGGAATCCAC 6476 >seq40372 Length=8222 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/198 (71%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || |||||||| || ||||| || || || | Sbjct 1485 ATGCAGATCTTCGTGAAAACCCTTACTGGAAAAACCATTACTCTGGA-GTAGAGAGTTCT 1427 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | ||| | |||| | ||||||||||| | || |||||||| Sbjct 1426 GATACAATCGATAATGTCAAAGCCAAAA-TCCAAGACAAAGAAGGCATTCCTCCAGATCA 1368 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| || | || || ||||| ||||| || ||||| | || ||| ||||| || Sbjct 1367 ACAACGGCTCATCTTCGCCGGGAAACAGCTAAGAGACGGCAGAACCCTAGCTGATTATAA 1308 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 1307 CATCCAGAAGGAATCAAC 1290 Score = 82.4 bits (90), Expect = 5e-11 Identities = 101/134 (75%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| || ||| | || |||||||| |||||||| || || ||||||||||| ||||| Sbjct 940 GACAAGGAGGGTATTCCTCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAACAGTTGGAA 881 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | | | || ||| |||||||| || ||||| || || || || ||| | ||| | Sbjct 880 GATGCA-GAAC-CTAGCGGATTACAATAT-CAAAAGGAATCTACGTTGCATCTGGTTCTG 824 Query 23824 AGGTTGCGAGGAGG 23837 || ||| | ||||| Sbjct 823 AGATTGAGGGGAGG 810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 336944402356100