Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq138370 167 5e-36 seq40372 150 4e-31 seq31517 149 1e-30 seq38170 120 7e-22 >seq138370 Length=13449 Score = 167 bits (184), Expect = 5e-36 Identities = 169/218 (78%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 |||||| ||||||||||| || || ||||||||||| ||||||||||||||||| | || Sbjct 4826 TCTGAGAACAAGATGAAGGGTGGATTCTTTTTGGATATTGTAATCGGCTAAAGTACGGCC 4767 Query 151949 ATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || ||||| ||||| |||||||| || |||||||| | | || ||||| Sbjct 4766 GTCTTCAAGCTGCTTT--CCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGAATGCCTTCT 4709 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| || || ||||| | |||| |||| |||||||| ||||||||||| Sbjct 4708 TTGTCTTGGATCTTGGCCTTGACGTTGTCTATTGTGTCGGAACTCTCGACTTCAAGAGTG 4649 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||| || |||| ||||| Sbjct 4648 ATTGTCTTTCCGGTGAGGGTCTTAACAAAGATTTGCAT 4611 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || || ||||| || || |||||||||||||| || ||||| | |||||| Sbjct 5278 AGCACAAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGACCATCT 5219 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || |||||||||||||| || || | | |||||||||||| ||| Sbjct 5218 TCCAGCTGTTTTCCAGCAAAGATAAGCCTCTGTTGATCTGGTGGGATTCCTTCCTTATCT 5159 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||| || | || | | |||| || ||||| ||||| | |||||| || Sbjct 5158 TGGATCTTAGCTTTCACGTTATCAATGGTGTCCGAGCTCTCGACTTCCAAAGTAATCGTC 5099 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | ||||| ||||| | |||||| Sbjct 5098 TTCCCGGTCAATGTCTTAACGAAAATCTGCAT 5067 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | ||| ||||| |||||||| |||||||||||||| || | |||| || || Sbjct 5051 GAGGACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCCAGGGTTCGGCCGTC 4992 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || ||| |||||||| || ||||| || ||||| | | ||| ||||| || || Sbjct 4991 CTCGAGTTGTTTTCCGGCGAAAATGAGCCTTTGTTGGTCTGGGGGGATGCCTTCTTTGTC 4932 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || || |||||| | || | | |||| || || || ||||| | ||| || || Sbjct 4931 TTGGATCTTAGCTTTGACGTTATCAATGGTGTCAGAGCTTTCAACTTCCAAAGTGATGGT 4872 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || ||||| ||||| ||||| | |||||| Sbjct 4871 TTTTCCGGTGAGGGTCTTAACGAAAATCTGCAT 4839 Score = 138 bits (152), Expect = 3e-27 Identities = 165/223 (74%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||||||||| |||||||| ||||| || ||||| || | || ||||||||| Sbjct 5506 AGAACAAGATGAAGAGTGGACTCTTTCTGGATATTATAATCAGCAAGTGTCCTCCCATCT 5447 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| || || ||||| | |||||||||||||| | |||||| ||||| || Sbjct 5446 TCCAATTGTTTACCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCC 5387 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || ||| | || | | | || || || || || || | |||||| || Sbjct 5386 TGAATCTTCGCCTTCACATTATCAATGGTATCCGAGCTTTCCACCTCCAAAGTAATCGTC 5327 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT-TTACCCTTA 152114 || || || | ||||| ||||| | ||||||| | |||||| Sbjct 5326 TTTCCGGTTAATGTCTTAACGAAAATCTGCATTCCTCCCCTTA 5284 >seq40372 Length=8222 Score = 150 bits (166), Expect = 4e-31 Identities = 162/213 (76%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || |||||||| || || || |||||||| ||||| |||| ||||| || || Sbjct 1274 GAGGACGAGGTGAAGAGTTGATTCCTTCTGGATGTTATAATCAGCTAGGGTTCTGCCGTC 1333 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 | ||| ||||||||||||||| |||| || || || | | || ||||| || || Sbjct 1334 TCTTAGCTGTTTCCCGGCGAAGATGAGCCGTTGTTGATCTGGAGGAATGCCTTCTTTGTC 1393 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| ||||| ||||||| | || | | || ||||||||||| || |||||||| || Sbjct 1394 TTGGATTTTGGCTTTGACATTATCGATTGTATCAGAACTCTCTAC-TCCAGAGTAATGGT 1452 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || || |||||||||| |||||| Sbjct 1453 TTTTCCAGTAAGGGTTTTCACGAAGATCTGCAT 1485 Score = 87.8 bits (96), Expect = 4e-12 Identities = 158/222 (71%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| | ||| || || ||||| | ||||| || ||||| || |||||||| |||| || Sbjct 815 CCTCAATCTCAGAACCAGATGCAACGTAGATTCCTTTTG-ATATTGTAATCCGCTAG-GT 872 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 ||| | |||||| | ||| ||||||||||| | | |||||| || | | || || Sbjct 873 TCTGC-ATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACC 931 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || ||||| || || || || | || | || ||||| || || || | Sbjct 932 CTCCTTGTCCTGAATCTTGGCCTTCAC-GT-TATATTGTATCAGAACTTTCAACCTCCAA 989 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||| | || |||||||||| |||||| Sbjct 990 CGTAAT-GTTTTTCCCGTTAATGT-TTCACGAAGATCTGCAT 1029 >seq31517 Length=16670 Score = 149 bits (164), Expect = 1e-30 Identities = 165/218 (76%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 |||||||||||| || || || |||||||||||||||||||||||||| ||||| | || Sbjct 2554 TCTGAGGACAAGGTGGAGTGTGGACTCTTTTTGGATGTTGTAATCGGCCAAAGTACGGCC 2495 Query 151949 ATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || || || ||||| ||||| ||||| | || ||||| || | | ||||||||| Sbjct 2494 GTCCTCGAGTTGCTTT--CCGGCAAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCC 2437 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| ||||| ||||| | || | | || || ||||| || || |||||| Sbjct 2436 TTATCTTGGATTTTGGCCTTGACGTTATCAATTGTATCAGAGCTCTCGACCTCGAGAGTA 2377 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || |||||||||| |||||| Sbjct 2376 ATGGTCTTTCCAGTTAGGGTTTTCACGAAGATCTGCAT 2339 Score = 138 bits (152), Expect = 3e-27 Identities = 162/217 (75%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 151890 CTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCA 151949 |||||||| | ||||| || || || |||||||| ||||||||||||| ||| | || Sbjct 2781 CTGAGGACCAAGTGAAGGGTCGATTCCTTTTGGATATTGTAATCGGCTAGAGTACGACCG 2722 Query 151950 TCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCT 152007 ||||| || ||||| ||||||||||| | ||||||||||| | | ||||||||||| Sbjct 2721 TCTTCGAGTTGCTTT--CCGGCGAAGATCAATCTCTGCTGGTCTGGAGGGATTCCTTCCT 2664 Query 152008 TTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAA 152067 | || || || || ||| || | || | |||| |||||||| ||||| | || | Sbjct 2663 TGTCCTGGATCTTGGCTTTCACGTTATCGATAGTGTCAGAACTCTCGACTTCCAAGGTGA 2604 Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || ||||| || || ||||||| ||||| Sbjct 2603 TTGTCTTTCCGGTGAGGGTTTTGACGAAGATTTGCAT 2567 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||||||||| || || || || || ||||| || || | || || |||||| Sbjct 3234 AGAACCAAATGAAGAGTGGATTCCTTCTGAATATTGTAGTCAGCAAGTGTCCTTCCATCT 3175 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| | |||||||||||| | | ||| || ||||| ||| Sbjct 3174 TCAAGCTGCTTACCAGCAAAGATTAACCTCTGCTGGTCTGGTGGGATACCCTCCTTATCT 3115 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||| || ||| | |||| | ||||||||||||| || || | ||| || || Sbjct 3114 TGGATCTTTGCCTTAACATTGTCTATGGTGTCTGAACTCTCAACCTCCAAAGTGATGGTC 3055 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | ||||| ||||||| |||||| Sbjct 3054 TTTCCGGTCAATGTCTTAACGAAGATCTGCAT 3023 Score = 116 bits (128), Expect = 9e-21 Identities = 152/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || || |||||||| || ||||||| ||| | || ||||| | Sbjct 3001 CAAG-TGAAGGGTTGATTCCTTCTGGATGTTATAGTCGGCTAGAGTACGGCCGTCTTCAA 2943 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| ||||| ||||| | |||||||||||| | | || |||||||| ||||| | Sbjct 2942 GCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGGA 2883 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||| || | || | | | || || || || ||||| | ||| || || || | Sbjct 2882 TCTTGGCTTTCACGTTATCAATGGTATCCGAGCTTTCAACTTCCAAAGTTATGGTCTTTC 2823 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || ||||| ||||||| |||||| Sbjct 2822 CAGTCAGGGTCTTAACGAAGATTTGCATT 2794 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || || || || ||||| || || | || | || || || | Sbjct 3685 CAAG-TGAAGGGTTGATTCCTTCTGAATATTGTAGTCAGCAAGGGTACGGCCGTCCTCGA 3627 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| | ||||||||| |||| | ||| |||||||| || |||| Sbjct 3626 GCTGCTTACCAGCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTATCCTGAA 3567 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| |||||| | || | | || |||||||| || || | ||| || || || | Sbjct 3566 TCTTTGCCTTGACATTGTCAATAGTATCCGAACTCTCCACCTCCAAAGTGATGGTCTTCC 3507 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || ||||||||||| |||| |||||| Sbjct 3506 CAGTCAGAGTCTTCACAAAGATCTGCAT 3479 >seq38170 Length=7308 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||||||||| || || || || || || ||||||||||| |||| || ||||| || | Sbjct 6460 GAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTTCTGCCGCC 6519 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || ||| ||||| ||||| || | || ||||||| | ||| ||||| || || Sbjct 6520 TTCGAGCTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCCGGTGGGATACCTTCTTTGTC 6579 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || || ||||||| | || | | |||| || || || || || || || || Sbjct 6580 TTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGT 6639 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||| | || || || |||||||||| |||||| || Sbjct 6640 TTTTTCAGTTAGGGTTTTCACGAAGATCTGCATCTT 6675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149998200703825