Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq138370 172 1e-37 seq31517 170 4e-37 seq38170 131 4e-25 seq40372 125 1e-23 seq33895 104 5e-17 >seq138370 Length=13449 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| ||| | ||| ||||| ||||||||||| ||||| Sbjct 5066 ACCACCACGAAGACGGAGGACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGC 5007 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| |||||||| ||||| || || | | ||||||||| || Sbjct 5006 CAGGGTTCGGCCGTCCTCGAGTTGTTTTCCGGCGAAAATGAGCCTTTGTTGGTCTGGGGG 4947 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || || |||||||||||||| ||||| ||| |||| || ||||| || ||| || Sbjct 4946 GATGCCTTCTTTGTCTTGGATCTTAGCTTTGACGTTATCAATGGTGTCAGAGCTTTCAAC 4887 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | |||||| || || || || | ||||||||||| |||||||| Sbjct 4886 TTCCAAAGTGATGGTTTTTCCGGTGAGGGTCTTAACGAAAATCTGCAT 4839 Score = 163 bits (180), Expect = 6e-35 Identities = 169/219 (77%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || ||||| || || || | || ||| || ||||||||||| ||||| | ||||| Sbjct 5284 AGCCGAAGCACAAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGA 5225 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || || ||||| || |||||||| | | ||||| || || || || ||| Sbjct 5224 CCATCTTCCAGCTGTTTTCCAGCAAAGATAAGCCTCTGTTGATCTGGTGGGATTCCTTCC 5165 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGACTTCGAGAGT 283060 || ||||||||||| ||||| ||| |||| || |||||||| ||| |||||||| | ||| Sbjct 5164 TTATCTTGGATCTTAGCTTTCACGTTATCAATGGTGTCCGA-GCTCTCGACTTCCAAAGT 5106 Query 283061 GATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| || ||||| ||||||||||| |||||||| Sbjct 5105 AATCGTCTTCCCGGTCAATGTCTTAACGAAAATCTGCAT 5067 Score = 156 bits (172), Expect = 9e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || ||||| | ||| ||||| ||||| || || ||||| Sbjct 5522 ACCACCACGAAGACGAAGAACAAGATGAAGAGTGGACTCTTTCTGGATATTATAATCAGC 5463 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | ||||| || | |||||| || ||||||||||| | || ||||| || Sbjct 5462 AAGTGTCCTCCCATCTTCCAATTGTTTACCAGCAAAGATCAACCTCTGCTGGTCCGGTGG 5403 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| || || ||||| || || || |||| || || ||||| ||| || Sbjct 5402 GATTCCCTCCTTATCCTGAATCTTCGCCTTCACATTATCAATGGTATCCGAGCTTTCCAC 5343 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || | ||| |||||||| || || || ||||||||||| ||||||||| Sbjct 5342 CTCCAAAGTAATCGTCTTTCCGGTTAATGTCTTAACGAAAATCTGCATT 5294 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 282888 AGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCC 282947 || || ||||| | ||| |||||||||||| ||||| || || | || ||||| || Sbjct 4822 AGAACAAGATGAAGGGTGGATTCTTTTTGGATATTGTAATCGGCTAAAGTACGGCCGTCT 4763 Query 282948 TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCT 283007 || || || || ||||||||||| | | ||| ||||| ||||| || || |||||| Sbjct 4762 TCAAGCTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGAATGCCTTCTTTGTCT 4703 Query 283008 TGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTC 283067 |||||||| || || ||| | || || ||||| ||| |||||||| |||||||| ||| Sbjct 4702 TGGATCTTGGCCTTGACGTTGTCTATTGTGTCGGAACTCTCGACTTCAAGAGTGATTGTC 4643 Query 283068 TTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || | |||||||| || || ||||| Sbjct 4642 TTTCCGGTGAGGGTCTTAACAAAGATTTGCAT 4611 >seq31517 Length=16670 Score = 170 bits (188), Expect = 4e-37 Identities = 169/216 (78%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 282885 CGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCA 282944 ||||| |||| |||| || ||| || || |||||||||||||||||||| || ||| Sbjct 3465 CGAAGAACCAAGTGTAGAGTCGATTCCTTCTGAATGTTGTAGTCAGCAAGCGTACGACCA 3406 Query 282945 TCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTG 283004 ||||| || || || || ||||||||||| | || || || || || || |||||| Sbjct 3405 TCCTCGAGCTGCTTACCTGCAAAGATCAATCTCTGCTGATCTGGTGGGATCCCTTCCTTG 3346 Query 283005 TCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGACTTCGAGAGTGAT 283063 |||||||||||||| || ||| |||||||||| || | |||| || || || | |||||| Sbjct 3345 TCTTGGATCTTTGCCTTAACGTTATCGATAGTATCAG-AGCTCTCAACCTCCAAAGTGAT 3287 Query 283064 CGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || ||||| |||||||| || |||||||| Sbjct 3286 TGTCTTTCCAGTCAACGTCTTAACAAAGATCTGCAT 3251 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || ||||| |||| || | || ||| || |||||||| ||||| || Sbjct 3022 ACCACCTCTCAATCGAAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTATAGTCGGC 2963 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| || || || ||||| |||||||||||||| | || ||||| || Sbjct 2962 TAGAGTACGGCCGTCTTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 2903 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||| ||||||||||| ||||| ||| |||| || || ||||| ||| || Sbjct 2902 AATACCTTCCTTATCTTGGATCTTGGCTTTCACGTTATCAATGGTATCCGAGCTTTCAAC 2843 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||| | ||| || ||||| || |||| ||||||||||| || |||||| Sbjct 2842 TTCCAAAGTTATGGTCTTTCCAGTCAGGGTCTTAACGAAGATTTGCATT 2794 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || ||||| |||| ||| | ||| ||| || || || ||||||||||| Sbjct 3250 ACCACCTCTCAATCGAAGAACCAAATGAAGAGTGGATTCCTTCTGAATATTGTAGTCAGC 3191 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | ||||| || || || || || |||||||| || | || ||||| || Sbjct 3190 AAGTGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATTAACCTCTGCTGGTCTGGTGG 3131 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| |||||||||||||| || || | || || ||||| ||| || || Sbjct 3130 GATACCCTCCTTATCTTGGATCTTTGCCTTAACATTGTCTATGGTGTCTGAACTCTCAAC 3071 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||| ||||| || ||||| ||||||||||| |||||||| Sbjct 3070 CTCCAAAGTGATGGTCTTTCCGGTCAATGTCTTAACGAAGATCTGCAT 3023 Score = 145 bits (160), Expect = 2e-29 Identities = 149/192 (78%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||||||||||||||| || || | || ||||| ||||| ||||| || ||||||||| Sbjct 2529 TCTTTTTGGATGTTGTAATCGGCCAAAGTACGGCCGTCCTCGAGTTGCTTTCCGGCAAAG 2470 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| | ||| || || ||||| || ||||| |||||||| || || || ||| || Sbjct 2469 ATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATTTTGGCCTTGACGTTA 2410 Query 283029 TCGATAGTGTCCGAAGCT-TCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || || || | |||| ||||| |||||||| || ||||| || || | || || || Sbjct 2409 TCAATTGTATCAG-AGCTCTCGACCTCGAGAGTAATGGTCTTTCCAGTTAGGGTTTTCAC 2351 Query 283088 GAATATCTGCAT 283099 ||| |||||||| Sbjct 2350 GAAGATCTGCAT 2339 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| |||| || | || ||| || || || |||||||||||| Sbjct 3705 CCACCACGAAGACGAAGAACCAAGTGAAGGGTTGATTCCTTCTGAATATTGTAGTCAGCA 3646 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| || || || || ||||||||||| | || || || || Sbjct 3645 AGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCCGGTGGG 3586 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| || || |||||||| || || | || ||||| |||||| || || Sbjct 3585 ATCCCTTCCTTATCCTGAATCTTTGCCTTGACATTGTCAATAGTATCCGAACTCTCCACC 3526 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||| ||||| || |||| |||||| || || |||||||| Sbjct 3525 TCCAAAGTGATGGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCAT 3479 Score = 140 bits (154), Expect = 7e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| |||||||| ||||| || || || || || || || || ||||| || ||||| || Sbjct 2758 TTCCTTTTGGATATTGTAATCGGCTAGAGTACGACCGTCTTCGAGTTGCTTTCCGGCGAA 2699 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| | || ||||| || || || |||||||| |||||||| ||||| ||| | Sbjct 2698 GATCAATCTCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTCACGTT 2639 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 |||||||||||| ||| |||||||| | ||||| ||||| || || | || || || Sbjct 2638 ATCGATAGTGTCAGAACTCTCGACTTCCAAGGTGATTGTCTTTCCGGTGAGGGTTTTGAC 2579 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 2578 GAAGATTTGCAT 2567 >seq38170 Length=7308 Score = 131 bits (144), Expect = 4e-25 Identities = 146/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| || |||||||||||||| | || || | ||| | || || ||||| |||||||| Sbjct 6481 TTCCTTCTGGATGTTGTAGTCGGATAGGGTTCTGCCGCCTTCGAGCTGTTTTCCGGCAAA 6540 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| | |||||||||||| || ||||| || |||||||||||||| ||||| || | Sbjct 6541 GATGAGACGTTGTTGGTCCGGTGGGATACCTTCTTTGTCTTGGATCTTGGCTTTGACATT 6600 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| ||||| || | ||| || || || || || || || | || | || || || Sbjct 6601 GTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTTTCAGTTAGGGTTTTCAC 6660 Query 283088 GAATATCTGCATTTT 283102 ||| |||||||| || Sbjct 6661 GAAGATCTGCATCTT 6675 >seq40372 Length=8222 Score = 125 bits (138), Expect = 1e-23 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| |||||| | || || || | || ||| || |||||||| || ||||| Sbjct 1260 ACCTCCACGGAGGCGAGG-ACGAGGTGAAGAGTTGATTCCTTCTGGATGTTATAATCAGC 1318 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | ||| || ||| ||||||||||| ||||| | |||||||| || || Sbjct 1319 TAGGGTTCTGCCGTCTCTTAGCTGTTTCCCGGCGAAGATGAGCCGTTGTTGATCTGGAGG 1378 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || || ||||||||||| || ||||| || ||||||| || || ||| || || Sbjct 1379 AATGCCTTCTTTGTCTTGGATTTTGGCTTTGACATTATCGATTGTATCAGAACTCTCTAC 1438 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || || || || | || || ||||| |||||||| Sbjct 1439 -TCCAGAGTAATGGTTTTTCCAGTAAGGGTTTTCACGAAGATCTGCAT 1485 Score = 114 bits (126), Expect = 3e-20 Identities = 157/212 (74%), Gaps = 7/212 (3%) Strand=Plus/Plus Query 282888 AGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCC 282947 || |||||||| ||||| ||| ||||| || ||||| || || || || | || ||| Sbjct 825 AGAACCAGATGCAACGTAGATTCCTTTTG-ATATTGTAATCCGCTAG-GTTCTGC-ATCT 881 Query 282948 TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCT 283007 || | ||||| ||||| ||||||||||| || || || ||||||||||||||||| Sbjct 882 TCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCC 941 Query 283008 TGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTC 283067 || ||||| || || ||| ||| || || || ||| ||| || || | || || || Sbjct 942 TGAATCTTGGCCTTCACGTTAT--ATTGTATCAGAACTTTCAACCTCCAACGTAAT-GTT 998 Query 283068 TTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || || ||||| |||||||| Sbjct 999 TTTCCCGTTAATGT-TTCACGAAGATCTGCAT 1029 >seq33895 Length=17743 Score = 104 bits (114), Expect = 5e-17 Identities = 179/241 (74%), Gaps = 22/241 (9%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGT--AGTCA 282929 ||||||||| || || || || ||||| | ||| | |||| |||||||| ||||| Sbjct 10644 ACCACCACGGAGACGGAGGACGAGATGGAGAGTGGAATATTTT-GGATGTTGGTAAGTCA 10586 Query 282930 GCAAGCGTGCGGCCATCC-TCTAGTTGTTTC-CCGGC--AAAGATCAAACGTTGTTGGTC 282985 || | || ||||| ||| || |||||||| ||||| ||||||||| ||||| || || Sbjct 10585 GCTAAGGTTCGGCCGTCCCTCAAGTTGTTTAGCCGGCGGAAAGATCAATCGTTGCTG-TC 10527 Query 282986 ACCCGGAATACCCT--CCTTGTCTTGGATCTT-TGCTTT-TACGGTATCGATAGTGTCCG 283041 || || ||| | |||||||||||||| ||||| ||| | ||||| ||||| | Sbjct 10526 TGGGGGCATGGCCTATCTTTGTCTTGGATCTTAGGCTTTGAACGTTGTCGAT-GTGTCGG 10468 Query 283042 AAGCTTCGA-CTTCGAG-AGTGATCGTCTTACCCGTCAAAGTCTT-AACGAATATCTGCA 283098 || |||||| | ||||| ||||| | |||| || || ||||| |||||| ||||||| Sbjct 10467 AA-CTTCGACCCTCGAGAAGTGA----CCTACCAGT-AAGGTCTTAAACGAAAATCTGCA 10414 Query 283099 T 283099 | Sbjct 10413 T 10413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1043271361208050