Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq31517 141 7e-29 seq40372 125 5e-24 seq138370 111 1e-19 seq38170 102 6e-17 >seq31517 Length=16670 Score = 141 bits (156), Expect = 7e-29 Identities = 174/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||||| || | |||| |||||| || ||||||||||| ||||| Sbjct 2800 TTGCATTCCTCCTCTCAACCTGAGGACCAAGTGAAGGGTCGATTCCTTTTGGATATTGTA 2741 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||||| || || |||| || || ||||| ||||| |||||||| | |||||| || Sbjct 2740 ATCGGCTAGAGTACGACCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTC 2681 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGG 44282 || ||| | |||||||| ||| ||||| |||| | ||| | || ||||| | Sbjct 2680 TGGAGGGATTCCTTCCTTGTCCTGGATCTT-GGCTTTCACGTTATCGATAGTGTCAGAAC 2622 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || || |||||||| |||||||| || |||||||||||||| Sbjct 2621 TCTCGACTTCCAAGGTGATTGTCTTTCCGGTGAGGGTTTTGACGAAGATTTGCAT 2567 Score = 136 bits (150), Expect = 3e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||||| || | |||| |||||| || ||||| |||||||| || || Sbjct 3025 CATACCACCTCTCAATCGAAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTATAGTC 2966 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||| || || |||| || ||||| || |||||||||||||| | |||||| |||| Sbjct 2965 GGCTAGAGTACGGCCGTCTTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGG 2906 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||||||||| || ||||| |||| | ||| | ||||| || | | || Sbjct 2905 GGGAATACCTTCCTTATCTTGGATCTTG-GCTTTCACGTTATCAATGGTATCCGAGCTTT 2847 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||| || || |||||||| || |||||||| |||||||||||||| Sbjct 2846 CAACTTCCAAAGTTATGGTCTTTCCAGTCAGGGTCTTAACGAAGATTTGCAT 2795 Score = 134 bits (148), Expect = 1e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| ||| | || ||||| || ||| ||| |||||||||||||| Sbjct 2572 TTGCATCCCTCCTCTCAATCTGAGGACAAGGTGGAGTGTGGACTCTTTTTGGATGTTGTA 2513 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||||| | || |||| || || ||||| |||||||||||||| | |||||||| Sbjct 2512 ATCGGCCAAAGTACGGCCGTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTTTGCTGATC 2453 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || ||| | |||||||| || || || ||| | | | || || || | | Sbjct 2452 TGGAGGAATTCCTTCCTTATCTTGGATTTTGGCCTTGACGTTATCAATTGTATCAGAGCT 2393 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| | ||||| |||||||| || ||||| ||||||||||| ||||| Sbjct 2392 CTCGACCTCGAGAGTAATGGTCTTTCCAGTTAGGGTTTTCACGAAGATCTGCAT 2339 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| | || | |||| ||| || || ||||| || |||||||| || Sbjct 3481 CATCCCACCTCTTAATCGAAGAACCAAGTGTAGAGTCGATTCCTTCTGAATGTTGTAGTC 3422 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || || | || || |||||||| || ||||||||||| | ||||||||||| Sbjct 3421 AGCAAGCGTACGACCATCCTCGAGCTGCTTACCTGCAAAGATCAATCTCTGCTGATCTGG 3362 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATT 44285 || | |||||||| || ||||| ||| | || ||| | || || || | | | Sbjct 3361 TGGGATCCCTTCCTTGTCTTGGATCTT-TGCCTTAACGTTATCGATAGTATCAGAGCTCT 3303 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||| || || |||||||| || | ||||| || ||||| ||||| Sbjct 3302 CAACCTCCAAAGTGATTGTCTTTCCAGTCAACGTCTTAACAAAGATCTGCAT 3251 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || ||||| || || ||||| || || || || |||| || Sbjct 3687 ACCAAGTGAAGGGTTGATTCCTTCTGAATATTGTAGTCAGCAAGGGTACGGCCGTCCTCG 3628 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || ||||||||||| | ||||||||| | || | |||||||| ||| Sbjct 3627 AGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTATCCTGA 3568 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | || || || | |||||||||| || || |||| Sbjct 3567 ATCTTTGCCTTGACATTGT--CAATAGTATCCGAACTCTCCACCTCCAAAGTGATGGTCT 3510 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || |||||||| ||||| ||||| Sbjct 3509 TCCCAGTCAGAGTCTTCACAAAGATCTGCAT 3479 >seq40372 Length=8222 Score = 125 bits (138), Expect = 5e-24 Identities = 171/231 (74%), Gaps = 7/231 (3%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || |||| ||||| ||||| || | ||| |||||||| || |||||||| Sbjct 806 CATGCCTCCCCTCAATCTCAGAACCAGATGCAACGTAGATTCCTTTTG-ATATTGTAATC 864 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || | || || |||| ||| || ||||| |||||||||||||||||||||| Sbjct 865 CGCTAGGTTCTGCA--TCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGG 922 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | ||| ||||| ||| ||||| |||| | ||| ||| || || | ||| Sbjct 923 AGGAATACCCTCCTTGTCCTGAATCTTGGCCTTC-ACGTT-ATATTGTATCAGAACTTTC 980 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| |||||| || |||||||| | || ||||||||||| ||||| Sbjct 981 AACCTCCAACGTAAT-GTTTTTCCCGTTAATGT-TTCACGAAGATCTGCAT 1029 >seq138370 Length=13449 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| | ||| | || || ||||| ||| || |||||||| |||||||| Sbjct 4841 CATCCCTCCTCTTAATCTGAGAACAAGATGAAGGGTGGATTCTTTTTGGATATTGTAATC 4782 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||| | || |||| || |||||||| ||||||||||| | | ||||| |||| Sbjct 4781 GGCTAAAGTACGGCCGTCTTCAAGCTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGG 4722 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||||| || || ||||| ||| | | |||| ||||||| || Sbjct 4721 TGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTGTCTATTGTGTCGGAACTCTC 4662 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | || || |||||||| ||||||||||| || ||||||||||| Sbjct 4661 GACTTCAAGAGTGATTGTCTTTCCGGTGAGGGTCTTAACAAAGATTTGCAT 4611 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| ||| ||| || ||||| || ||||| || ||| | | | || ||| Sbjct 5503 ACAAGATGAAGAGTGGACTCTTTCTGGATATTATAATCAGCAAGTGTCCTCCCATCTTCC 5444 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | || || || ||||||||||| | |||||| || | || | || ||||| ||| Sbjct 5443 AATTGTTTACCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGA 5384 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | ||||| || | | ||||||||||| |||||||||||| Sbjct 5383 ATCTTCGCCTTCACATTATCAATGGTATCCGAGCTTTCCACCTCCAAAGTAATCGTCTTT 5324 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| ||||| || ||||| Sbjct 5323 CCGGTTAATGTCTTAACGAAAATCTGCAT 5295 Score = 105 bits (116), Expect = 5e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || || || | | ||| ||||| || || ||||| |||||||||||||| Sbjct 5297 CATTCCTCCCCTTAGCCGAAGCACAAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAATC 5238 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || | ||| | || |||||||| || || |||||||| | | ||| ||||||| Sbjct 5237 AGCCAAAGTGCGACCATCTTCCAGCTGTTTTCCAGCAAAGATAAGCCTCTGTTGATCTGG 5178 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| || ||||| |||| | ||| | |||||||| | | | Sbjct 5177 TGGGATTCCTTCCTTATCTTGGATCTTA-GCTTTCACGTTATCAATGGTGTCCGAGCTCT 5119 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||| ||||||||||| || || | ||||| ||||| || ||||| Sbjct 5118 CGACTTCCAAAGTAATCGTCTTCCCGGTCAATGTCTTAACGAAAATCTGCAT 5067 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| || || ||| ||| || |||||||||||||| || || || |||| || Sbjct 5047 ACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCCAGGGTTCGGCCGTCCTCG 4988 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || || || ||||| || || | | || || |||| || | ||||| || || Sbjct 4987 AGTTGTTTTCCGGCGAAAATGAGCCTTTGTTGGTCTGGGGGGATGCCTTCTTTGTCTTGG 4928 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| | ||| | |||||||| | | ||| || |||| || || || || Sbjct 4927 ATCTTA-GCTTTGACGTTATCAATGGTGTCAGAGCTTTCAACTTCCAAAGTGATGGTTTT 4869 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||||||||| ||||| || ||||| Sbjct 4868 TCCGGTGAGGGTCTTAACGAAAATCTGCAT 4839 >seq38170 Length=7308 Score = 102 bits (112), Expect = 6e-17 Identities = 154/214 (72%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCT--CGTCGT 44186 || ||||| || ||| ||||| ||||||||||| |||| || || || || | | Sbjct 6464 ACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAG--GGTTCTGCCGCCTT 6521 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | ||||| || ||||||||||| | ||| || || || | || | |||||| || || Sbjct 6522 CGAGCTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCCGGTGGGATACCTTCTTTGTCTT 6581 Query 44247 TTATCTTCTGCTT---CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 ||||| |||| || ||| | |||||||| | |||||| ||||| | || || | Sbjct 6582 GGATCTTG-GCTTTGACATTGT--CGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGG 6638 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||| | || ||||| ||||||||||| ||||| Sbjct 6639 TTTTTTCAGTTAGGGTTTTCACGAAGATCTGCAT 6672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358855932440775