Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq20199 123 5e-23 seq21028 100 6e-16 seq21195 98.7 2e-15 seq20876 98.7 2e-15 seq20806 98.7 2e-15 seq20368 98.7 2e-15 seq19925 98.7 2e-15 seq19847 98.7 2e-15 seq19502 98.7 2e-15 seq19135 98.7 2e-15 seq18616 98.7 2e-15 seq18577 98.7 2e-15 seq18376 98.7 2e-15 seq18224 98.7 2e-15 seq19604 95.1 3e-14 seq20819 87.8 4e-12 seq20983 84.2 5e-11 >seq20199 Length=1256174 Score = 123 bits (136), Expect = 5e-23 Identities = 562/871 (65%), Gaps = 35/871 (4%) Strand=Plus/Minus Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809 |||| | |||||||||||| || || | || ||||| ||||||||||| || | ||| Sbjct 343996 TTCTGTATGTTCCCAATCCACTACCCTCAGATCTGGGAGATGTACAAGAAAGCCGAAGCA 343937 Query 229810 ACTTTCTGGACCACTGAGGAAGTTCCTCTGAACGC-AGAC-GTCGTCGACTGGCGTGAGA 229867 |||||||||| |||| ||||| ||| | | | |||| |||| ||||||| |||| Sbjct 343936 TCTTTCTGGACGGCTGAAGAAGTCGATCT-ATCTCAAGACGGTCG-CGACTGG---GAGA 343882 Query 229868 AACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCG 229927 | ||||| |||| || | || |||||||||||| |||| | ||| ||||| | || | Sbjct 343881 ATCTCAACGACGGAGAGAGGCACTTCATCAAACACGTCCTCGCTTTCTTCGCCGCATCTG 343822 Query 229928 ATGGTATTGTGATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAG 229986 | || || || | || ||||| | || || ||| || || || | || Sbjct 343821 ACGGAATCGTTCTCGAGAATCT-CGCTTCACGGTTCATGTCCGATGTGCAAGTCTCTGAA 343763 Query 229987 GCACGGCAATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATA 230042 || || || || | | ||| | ||| | ||| |||||| || || || Sbjct 343762 GCGCGTGCTTTCTACGGGTTCCAGATCGCGATTGA--GAA--TATCCACTCGGAGATGTA 343707 Query 230043 TGCTCTGCTTATCGACGCGCTTATTTC--CGACGAGCAAGAACGGAACGAGCTTTTTGAT 230100 ||| || |||| | |||| || ||| | |||| | || | || ||| Sbjct 343706 CAGTCTCCTCCTCGA--CACTTACATCAAAGACAACAAAGAGAGAGACCATCTCTTTCGG 343649 Query 230101 GCCATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAA 230160 ||||| |||| ||||| || ||| || || | ||||| ||| ||| | || Sbjct 343648 GCCATCGAAACAATCCCTTGCGTCGCTAAAAAAGCCCAATGGGCCATGAAGTGGATCGA- 343590 Query 230161 CCTGG---TAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTG 230217 ||| | | | || || ||| | ||||||||| | || || |||||||| | Sbjct 343589 --TGGATCTCAGACTTTCGCTGAGAGAATCGTCGCCTTCGCTTGCGTCGAAGGTATCTTC 343532 Query 230218 TTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTC 230277 || || || || |||||| | ||||| ||||| ||| |||| | |||||||| | Sbjct 343531 TTCTCAGGCAGCTTCTGCTCAATCTTCTGGCTCAAGAAACGAGGTCTCATGCCTGGGTTG 343472 Query 230278 GGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT 230337 | | || |||||||| ||| || ||||| || | || | |||| | ||| Sbjct 343471 ACTTTCTCCAACGAGTTGATCTCACGAGACGAAGGCTTACACTGCGATTTCGCCTGCCTT 343412 Query 230338 ATGTATTCAAAGCTC--CAGAAC-AAGCTACCATTCGAGACGGTCAAACAAATCATTACA 230394 || || | |||| || || ||||| | ||| || || || | Sbjct 343411 ATCTA---CACGCTCTTGAGGACGAAGCTCTCGGAGGAGCGCGTGAAGTCGATTGTATGT 343355 Query 230395 GAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTGG 230453 || || ||||| | ||| | |||||| | || ||||| |||| || ||| || |||| Sbjct 343354 GACGCGGTTGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCTTG-CGCGTTGGTTGG 343296 Query 230454 CATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGC 230513 |||||| ||| | ||| | ||||| ||||| || || || || | |||| | ||| Sbjct 343295 GATGAACCGTGAGTTGATGAGTCAGTATATCGAGTTTGTGGCGGATAGGCTTTTGGGTGC 343236 Query 230514 ACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTC 230573 ||||| |||| || |||||| ||| || |||| | |||||| | || || Sbjct 343235 GCTTGGGTACGGTAAGGTGTACGGTGTGGTGAATCCGTTTGATTGGATGGAGTTAATCTC 343176 Query 230574 GCTTCAAGGGAAGACCAACTTCTTCGAAAAG 230604 |||||| ||||| || |||||||| || ||| Sbjct 343175 GCTTCAGGGGAAAACAAACTTCTTTGAGAAG 343145 >seq21028 Length=1343725 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 1335514 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1335455 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1335454 CCCCACGGTGGGC 1335442 >seq21195 Length=1746141 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1701300 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1701241 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1701240 CCCACGGTGGGC 1701229 >seq20876 Length=522711 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 129226 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 129285 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 129286 CCCACGGTGGGC 129297 >seq20806 Length=601847 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 534436 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 534377 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 534376 CCCACGGTGGGC 534365 >seq20368 Length=285265 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 145758 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 145817 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 145818 CCCACGGTGGGC 145829 >seq19925 Length=266983 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 241993 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 242052 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 242053 CCCACGGTGGGC 242064 >seq19847 Length=336592 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 194289 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 194230 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 194229 CCCACGGTGGGC 194218 >seq19502 Length=708233 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 696081 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 696022 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 696021 CCCACGGTGGGC 696010 >seq19135 Length=1448613 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 369700 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 369759 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 369760 CCCACGGTGGGC 369771 >seq18616 Length=1290245 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 488218 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 488159 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 488158 CCCACGGTGGGC 488147 >seq18577 Length=181797 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 19618 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 19677 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 19678 CCCACGGTGGGC 19689 >seq18376 Length=473425 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 43253 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 43194 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 43193 CCCACGGTGGGC 43182 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 78285 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 78344 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 78345 CCCACGGTGGGC 78356 >seq18224 Length=14928 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 9713 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9654 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9653 CCCACGGTGGGC 9642 >seq19604 Length=1120120 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||| ||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 588265 GCCCGTCTAGTTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 588206 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 588205 CCCACGGTGGGC 588194 >seq20819 Length=394994 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/72 (88%), Gaps = 2/72 (3%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||| || Sbjct 14981 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC--GC 15038 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 15039 CCCACGGTGGGC 15050 >seq20983 Length=234385 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/65 (89%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 165258 CCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCACCGGTTCGAACCCG 165317 |||||||||||| | |||||| |||||||| |||||||||||||||||||||||||| Sbjct 104344 CCATAGCTCAGTGG--TAGAGCATTCGACTGCAGATCGAGAGGTCACCGGTTCGAACCCG 104287 Query 165318 GTTGG 165322 ||||| Sbjct 104286 GTTGG 104282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057534540676910