Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq20199 165 8e-36 >seq20199 Length=1256174 Score = 165 bits (182), Expect = 8e-36 Identities = 575/875 (66%), Gaps = 23/875 (3%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||||||||||| ||| | || || || ||||| ||||| |||| || || || || Sbjct 343126 TTTGGTAATCGCCAACTCTCTTCTCAAAGAAGTTTGTTTTCCCCTGAAGCGAGATTAACT 343185 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||| ||||||| ||||| | | | ||| |||||| || | | | | Sbjct 343186 CCATCCAATCAAACGGATTCACCACACCGTACACCTTACCGTACCCAAGCGCACCCAAAA 343245 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 |||||||| ||||| || ||||| || | ||| || || | |||||| || | | || Sbjct 343246 GCCTATCCGCCACAAACTCGATATACTGACTCATCAACTCACGGTTCATCCCAACCA-AC 343304 Query 16854 GTACC-GGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 | | ||||| || || || ||| || | ||| || ||||||| || | ||| Sbjct 343305 GCGCAAGGAAGCGCGTCGCACACAAACTCCCT-CTCGATCTCAACCGCGTCACATACAAT 343363 Query 16912 --ACTAGCAACTCGTTCCTCGGACGGTGTA-TGTTTAAGATGTTTAAACATCAGACATGC 16968 ||| || || ||||| || | | | | |||| | | | || || || || Sbjct 343364 CGACTTC--ACGCGCTCCTCCGAGAGCTTCGTCCTCAAGA-GCGTGTAGATAAGGCAGGC 343420 Query 16969 GAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGG 17028 ||||||||| ||||| || ||||||| ||| | ||||| || || |||||||| || Sbjct 343421 GAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATCAACTCGTTGGAGAAAGTCAACCCAGG 343480 Query 17029 CATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACC 17088 ||| ||||||||||| | ||| || || | | ||| || || ||||| ||||| Sbjct 343481 CATGAGACCTCGTTTCTTGAGCCAGAAGATTGAGCAGAAGCTGCCTGAGAAGAAGATACC 343540 Query 17089 CTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTC-GCG-TCTTTGTTACGAATC 17146 |||||| | || || |||| | || || ||| | ||| | | || | || ||| Sbjct 343541 TTCGACGCAAGCGAAGGCGACGATTCTCTCAGCGAAAGTCTGAGATCCAT----CG-ATC 343595 Query 17147 CATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAAT 17206 || ||| |||| | |||||||| | |||| || ||||| |||||| ||| Sbjct 343596 CACTTCATGGCCCATTGGGCTTTTTTAGCGACGCAAGGGATTGTTTCGATGGCCCGAAAG 343655 Query 17207 AATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCG 17266 | | ||| | || | ||| | || || || |||| ||| || |||||||| || Sbjct 343656 AGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGGAGGAGACTGTACATCTCC 343715 Query 17267 GAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATTTG 17325 ||||| || ||||| || || ||||| || ||||| |||||| || ||||| | | ||| Sbjct 343716 GAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCA-CGCGCTTCAGAGACTTG 343774 Query 17326 AACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGA 17384 || || || | ||| ||| || ||||| ||| ||||| ||||| ||||||| Sbjct 343775 CACATCGGACAT-GAACCGTGAAGCGAGATTCTCGAGAACGATTCCGTCAGATGCGGCGA 343833 Query 17385 AAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTG-TAAGAACGCGCCAGTCC 17443 | || || | | || || ||||| | | || |||| | | ||| |||||| Sbjct 343834 AGAAAGCGAGGACGTGTTTGATGAAGTGCCTCTC-TCCGTCGTTGAGATTCTCCCAGTCG 343892 Query 17444 TTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTA 17503 |||| |||| ||| |||||||| | ||||| ||| || | || || || Sbjct 343893 CGACCGTCTTGAGATAGATCGACTTCTTCAGCCGTCCAGAAAGATGCTTCGGCTTTCTTG 343952 Query 17504 TACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||||| | ||| || | | ||| || || ||||| Sbjct 343953 TACATCTCCCAGATCTGAGGGTAGTGGATTGGGAA 343987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517407434732760