Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq20199 123 3e-23 >seq20199 Length=1256174 Score = 123 bits (136), Expect = 3e-23 Identities = 393/591 (66%), Gaps = 15/591 (3%) Strand=Plus/Plus Query 16196 ATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAA 16255 || || || ||||| ||||| |||| |||||||||| ||| | |||||||| ||| Sbjct 343410 ATAAGGCAGGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATCAACTCGTTGGAGAAA 343469 Query 16256 GTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGA 16314 || ||||| ||||| ||||||||||| | |||||| || | |||| || || || Sbjct 343470 GTCAACCCAGGCATGAGACCTCGTTTCTTGAGCCAGAAGATTG-AGCAGAAGCTGCCTGA 343528 Query 16315 AAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTT 16374 ||||| ||||| || || | || || |||| | || || ||| | || | | Sbjct 343529 GAAGAAGATACCTTCGACGCAAGCGAAGGCGACGATTCTCTCAGCGAAAGTCTGAGATCC 343588 Query 16375 ATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTAT 16434 || || ||||| ||| |||||| |||||||| | ||| || ||||| || Sbjct 343589 AT--CG-ATCCACTTCATGGCCCATTGGGCTTTTTTAGCGACGCAAGGGATTGTTTCGAT 343645 Query 16435 GGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACT 16494 |||| ||| | | ||| | || | | || | || || || || | || | ||| Sbjct 343646 GGCCCGAAAGAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGGAGGAGACT 343705 Query 16495 GTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG-AAGCATCGAGCCT 16553 |||||| || ||||| || ||||| || || ||||| || || ||| ||||| || || | Sbjct 343706 GTACATCTCCGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCA-CGCGCTT 343764 Query 16554 CCGCTATTTGTACTTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCA 16612 | | | ||| || || || | || ||| || || ||||| ||||| |||||| Sbjct 343765 CAGAGACTTGCACATCGGACAT-GAACCGTGAAGCGAGATTCTCGAGAACGATTCCGTCA 343823 Query 16613 CTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATG-TAAGAAT 16671 ||| || || || || | | ||| || ||||| | | || || | | | ||| | Sbjct 343824 GATGCGGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGCCTCTC-TCCGTCGTTGAGATT 343882 Query 16672 ATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCA-AAAGCTAGCCA 16730 | ||| || |||| |||| ||| |||||||| | |||||| |||| | || Sbjct 343883 CTCCCAGTCGCGACCGTCTTGAGATAGATCGACTTCTTCAGCCGTCCAGAAAGAT-GCTT 343941 Query 16731 CTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTA-TGGGAA-ATAC 16779 | || || || ||||| | ||| || | | ||| || | |||||| |||| Sbjct 343942 CGGCTTTCTTGTACATCTCCCAGATCTGAGGGTAGTGGATTGGGAACATAC 343992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511277871533240