Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq19402 118 8e-22 seq18862 104 2e-17 seq21007 87.8 1e-12 >seq19402 Length=197664 Score = 118 bits (130), Expect = 8e-22 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 |||||||| || ||| ||||||||| || ||||| || ||||| | |||||| | | Sbjct 22539 TGAGCATCACCAATAACATGGATAAAATCACCAGGAACAAGATTGCACAAATGAGCTAGC 22598 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 ||||| || | |||||||||| |||||||||||| ||||| || | ||||| || ||| Sbjct 22599 ATGCACGTAAGAAGAGAATAGGAAGCAATGTTAAACGGCACACCAAGTCCCATGTCCGCT 22658 Query 101828 GATCTTTGATACAGTTGACAGGAAAGCT 101855 || | ||||||| |||||| || |||| Sbjct 22659 GAACGCTGATACATTTGACATGAGAGCT 22686 >seq18862 Length=32547 Score = 104 bits (114), Expect = 2e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 |||||||| || ||| | ||||||| || ||||| || ||||| || ||||| | | Sbjct 12059 TGAGCATCACCAATAACAAGGATAAAATCACCAGGAACAAGATTGCACACGTGAGCTAGC 12000 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 |||| || | |||||| ||| |||||||||||| ||||| || | ||||| || || Sbjct 11999 ATGCTCGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGTCCCATGTCCACT 11940 Query 101828 GATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTG 101877 || | |||||| |||||| || |||| ||| || |||||||| || Sbjct 11939 GAACGCTGATACGTTTGACATGAGAGCTCTCCTTCTGCCACATAAAACTG 11890 >seq21007 Length=954693 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814 ||| ||||| | ||||| || | ||| || || ||||||||||| || || || | Sbjct 134486 GACGTGAGCTAGGATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCAAG 134427 Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAA 101874 |||||||||||||| | ||||||| |||||| ||||||| ||||| |||||||| Sbjct 134426 ACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTTGCAACATAAAA 134367 Query 101875 TTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGC 101934 || || | || || || || | |||| || ||| ||| ||||||||| Sbjct 134366 CTGCGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGC 134307 Query 101935 ACACATTAACATCCTTCTATC 101955 |||||| |||| || ||| Sbjct 134306 CGACATTATTATCCGTCGATC 134286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361157170489607