Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq20199 141 1e-28 seq19642 86.0 7e-12 >seq20199 Length=1256174 Score = 141 bits (156), Expect = 1e-28 Identities = 394/594 (66%), Gaps = 8/594 (1%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || |||||||||||||||| || ||||||| || || |||||||| || || | Sbjct 343416 CAGGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATCAACTCGTTGGAGAAAGTCAAC 343475 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 || ||||| || || || || || ||||| || || || ||| | | | || || ||||| Sbjct 343476 CCAGGCATGAGACCTCGTTTCTTGAGCCAGAAGATTGA-GCAGAAGCTGCCTGAGAAGAA 343534 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTC-TCCATAACCGGCGCTGTCATGTA 24312 || ||||| || || ||||| | | ||| || | | | | | | | ||| | Sbjct 343535 GATACCTTCGACGCAAGCGAAGGCGACGATTCTCTCAGCGAAAGTCTGAGAT-CCATCGA 343593 Query 24313 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 24372 ||||||| ||||| | ||| || || || ||||| ||||| || || || || Sbjct 343594 TCCACTTCATGGCCCATTGGGCTTTTTTAGCGACGCAAGGGATTGTTTCGATGGCCCGAA 343653 Query 24373 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 24432 |||||| || | | || || | ||||| | || || || | | ||||| ||||| | Sbjct 343654 AGAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGGAGGAGACTGTACATCT 343713 Query 24433 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 24492 |||| || || || ||||| || || || || ||||||||| | || || | | | Sbjct 343714 CCGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCTTCAGAGACTT 343773 Query 24493 GTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 24551 | || || ||| || ||| || | ||| || || ||||||||| || || Sbjct 343774 GCACATC-GGACATGAACCGTGAAGCGAGATTCTCGAGAACGATTCCGTCAGATGCGGCG 343832 Query 24552 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATC 24610 || || || | || ||||| || || | | || || | ||| || || | ||| || Sbjct 343833 AAGAAAGCGAGGACGTGTTTGATGAAGTGCCTCTC-TCCGTCGTTGAGATTCTCCCAGTC 343891 Query 24611 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 24670 |||| ||||| ||| |||||||| | ||||| || ||||| || || || || Sbjct 343892 GCGACCGTCTTGAGATAGATCGACTTCTTCAGCCGTCCAGAAAGATGCTTCGGCTTTCTT 343951 Query 24671 ATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 24724 ||||| | |||||| | | | || || ||||| || ||| ||||| | ||| Sbjct 343952 GTACATCTCCCAGATCTGAGGGTAGTGGATTGGGAACATACAGAATCTGTCTGG 344005 >seq19642 Length=374925 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| ||||| | || | ||| || | || |||| | || ||| |||| |||||| Sbjct 361682 TCCTCCTTGATCGACATAACGAGCAGTATCGTTGAAAACACGCAGCATAGGAACAATACC 361741 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| || | ||||| || || || || |||||| | ||||| |||||| || ||| Sbjct 361742 ATTAGACGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATATTATGAACTGA 361801 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || ||| || | || || ||| | || ||||| || Sbjct 361802 GACACCAATACCTCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 361861 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405 ||| || || |||||||| ||||| | ||||||||||| Sbjct 361862 GCCTTCAATGCTATCATCTTTCATGCAGATCAGAAAACAGCT 361903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593563098597360