Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq19979 89.7 4e-13 seq20655 86.0 5e-12 seq19059 86.0 5e-12 seq21172 84.2 2e-11 seq20422 84.2 2e-11 seq19364 82.4 7e-11 >seq19979 Length=600886 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||| || || |||||||| || || || || |||||||| ||| |||||||| Sbjct 474405 GATCAGCAGAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGATGGACGTACTTTGGCCGAT 474464 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 |||||||| ||||||||||||||||| ||| |||| ||| Sbjct 474465 TACAATATCCAGAAGGAATCTACTCTCCACTTGGTCTTA 474503 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||| || || ||||||||||| || || || ||||||| | ||| |||||||| Sbjct 464767 GATCAGCAGAGGCTTATCTTTGCTGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGAT 464826 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||||| || ||||||||||||||||| || ||||| || Sbjct 464827 TACAACATCCAGAAGGAATCTACTCTCCATTTGGTGCTA 464865 >seq20655 Length=190867 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || | || || || || || ||| ||| |||| | | Sbjct 174671 ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACGATCACCCTCGAGGTGGAAAGCTCT 174612 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | | |||| || ||| ||||| ||||| | || ||||| Sbjct 174611 GACACGATCGACAACGTTAAAGCCAAGATTCAGGATAAGGAAGGCATTCCTCCGGATCAG 174552 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| |||||||| || || || || ||||||| | ||| | |||||||||||| Sbjct 174551 CAAAGGCTTATCTTCGCCGGTAAGCAGTTGGAAGACGGCCGTACTTTAGCCGATTACAAT 174492 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || |||||||| || ||||| ||| ||||||| || Sbjct 174491 ATCCAGAAGGAGTCGACTCTCCACTTGGTGTTGCG 174457 >seq19059 Length=274371 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || | || || || || || ||| ||| |||| | | Sbjct 258175 ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACGATCACCCTCGAGGTGGAAAGCTCT 258116 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | | |||| || ||| ||||| ||||| | || ||||| Sbjct 258115 GACACGATCGACAACGTTAAAGCCAAGATTCAGGATAAGGAAGGCATTCCTCCGGATCAG 258056 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| |||||||| || || || || ||||||| | ||| | |||||||||||| Sbjct 258055 CAAAGGCTTATCTTCGCCGGTAAGCAGTTGGAAGACGGCCGTACTTTAGCCGATTACAAT 257996 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || |||||||| || ||||| ||| ||||||| || Sbjct 257995 ATCCAGAAGGAGTCGACTCTCCACTTGGTGTTGCG 257961 >seq21172 Length=998197 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/112 (78%), Gaps = 4/112 (4%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||||| | || ||||||||| || || || ||||| || || ||||||||| Sbjct 271863 GACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGTAAGCAACTGGAA 271922 Query 29115 GAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| | || |||| || |||||||| || ||||| || ||||||||||| Sbjct 271923 GATGGACGAACACTA--GCGGATTACAACATCCAGAAAGAGTCTACTCTTCA 271972 >seq20422 Length=233597 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||| ||| | || ||||| || | || ||||| || || || || || || Sbjct 131004 GACAAAGAGGGTATTCCTCCGGATCAGCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAG 131063 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| ||| ||||||||||||||||||||||||| ||||| |||||| ||||||| Sbjct 131064 GATGGTCGCACTTTGGCCGATTACAATATTCAGAAGGAGTCTACGCTTCACTTGGTGTTG 131123 Query 29175 CGATTACGAGGAGG 29188 || | || ||||| Sbjct 131124 CGTCTGCGTGGAGG 131137 >seq19364 Length=374643 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||| ||||| ||||||||||| || || || || |||||| ||| |||| ||| Sbjct 235729 GATCAGCAAAGGCTTATCTTTGCCGGTAAGCAGCTTGAAGATGGACGTACTTTGGCTGAT 235670 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 |||| |||||| |||||||| ||||| ||| |||| Sbjct 235669 TACAGTATTCAAAAGGAATCGACTCTCCACTTGGT 235635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428224509091835