Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq19776 107 2e-18 seq20655 104 2e-17 seq19979 104 2e-17 seq19059 104 2e-17 seq18898 104 2e-17 seq20422 98.7 8e-16 seq19630 89.7 4e-13 >seq19776 Length=1148151 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| ||| | || |||||||| || ||||| ||||| || Sbjct 756058 CCACCACGGAGACGGAGCACCAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 755999 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | |||| ||||||||||| || || |||| | ||||||||||||| || Sbjct 755998 AGTGTACGCCCGTCTTCCAGCTGTTTCCCGGCGAAAATCAATCTCTGCTGGTCCGGTGGG 755939 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| |||||| | | ||| || || | ||| Sbjct 755938 ATTCCCTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATCGTGTCCGACGATTCCACC 755879 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||| || |||| ||||| || || || ||||| Sbjct 755878 TCGAGTGTGATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 755832 >seq20655 Length=190867 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | ||| ||||| |||||||||||||| |||||||| || Sbjct 174217 CCACCACGGAGCCTGAGGACGAGATGTAAAGTCGACTCCTTTTGAATATTATAGTCAGCA 174276 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| || || || || ||| | || | || ||||||||| || Sbjct 174277 AGAGTACGGCCATCCTCGAGTTGCTTTCCTGCAAAGATCAACCTTTGCTGGTCCGGTGGG 174336 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || ||||| || ||||| || || | | | | ||| ||| |||| Sbjct 174337 ATTCCCTCCTTATCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCAGAACTCTCCACC 174396 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||| ||||| ||||| || || ||||| || || ||||| Sbjct 174397 TCCAAAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 174443 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||||||||| |||| ||| | || || ||||| || || Sbjct 174019 GTTGACTCCTTCTGGATGTTATAGTCAGCCAAAGTTCTACCATCTTCAAGCTGCTTTCCA 174078 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | |||||||| ||| || | || |||||||| ||||| |||| Sbjct 174079 GCAAAGATCAACCTCTGCTGATCCGGAGGAATACCCTCCTTGTCTTGAATCTTCGCTTTC 174138 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | |||||| | |||| |||| ||||| ||||| || || ||||| Sbjct 174139 ACATTATCAATCGTATCAGAGCTCTCCACCTCCAAAGTAATAGTCTTTCCCGTCAACGTC 174198 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 174199 TTGACAAAAATCTGCAT 174215 >seq19979 Length=600886 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || ||||||||||||||||| ||||| || || || | | || || || || || || Sbjct 465305 GTCGACTCCTTTTGAATGTTGTAGTCAGCGAGAGTACGCCCATCTTCAAGTTGCTTTCCG 465246 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | |||||||||||| || | ||| |||||||| |||||| ||| Sbjct 465245 GCAAAGATCAACCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCTTTG 465186 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | || ||| |||| |||| ||||||||||| || || ||||| Sbjct 465185 ACATTGTCAATGGTGTCAGAACTCTCCACCTCCAAAGTAATGGTCTTTCCCGTCAACGTC 465126 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| |||||||| Sbjct 465125 TTGACAAAGATTTGCAT 465109 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||| |||||||| |||||||| || || ||||| || | | ||| Sbjct 475414 AGCACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCAGCCAGTGTACGACCATCC 475355 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || || | || || | |||||||||| || | |||||||||||| Sbjct 475354 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCC 475295 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || ||| | ||| ||| | ||| || ||| Sbjct 475294 TGGATCTTGGCCTTCACGTTATCAATGGTGTCAGAGCTCTCAACTTCGAGGGTGATTGTC 475235 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||| | || |||||||| || ||||| Sbjct 475234 TTTCCGGTAAGGGTCTTGACAAAGATCTGCAT 475203 >seq19059 Length=274371 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | ||| ||||| |||||||||||||| |||||||| || Sbjct 257721 CCACCACGGAGCCTGAGGACGAGATGTAAAGTCGACTCCTTTTGAATATTATAGTCAGCA 257780 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| || || || || ||| | || | || ||||||||| || Sbjct 257781 AGAGTACGGCCATCCTCGAGTTGCTTTCCTGCAAAGATCAACCTTTGCTGGTCCGGTGGG 257840 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || ||||| || ||||| || || | | | | ||| ||| |||| Sbjct 257841 ATTCCCTCCTTATCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCAGAACTCTCCACC 257900 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||| ||||| ||||| || || ||||| || || ||||| Sbjct 257901 TCCAAAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 257947 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||||||||| |||| ||| | || || ||||| || || Sbjct 257523 GTTGACTCCTTCTGGATGTTATAGTCAGCCAAAGTTCTACCATCTTCAAGCTGCTTTCCA 257582 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | |||||||| ||| || | || |||||||| ||||| |||| Sbjct 257583 GCAAAGATCAACCTCTGCTGATCCGGAGGAATACCCTCCTTGTCTTGAATCTTCGCTTTC 257642 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | |||||| | |||| |||| ||||| ||||| || || ||||| Sbjct 257643 ACATTATCAATCGTATCAGAGCTCTCCACCTCCAAAGTAATAGTCTTTCCCGTCAACGTC 257702 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 257703 TTGACAAAAATCTGCAT 257719 >seq18898 Length=1351152 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || ||||||||||| ||||| ||||| || || || ||||||| ||||| || || Sbjct 748627 GTCGACTCCTTTTGGATGTTGTAGTCAGCAAGAGTCCTTCCGTCCTCGAGCTGCTTCCCG 748568 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | |||||||||||||||||| || | ||||||||||| |||||| || Sbjct 748567 GCGAAGATAAGTCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTG 748508 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || ||| | ||| || | || ||||||||||| || | ||| Sbjct 748507 ACATTGTCGATGGTGTCAGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCAGTGAGAGTT 748448 Query 21159 TTGACAAATATTTGCAT 21175 || || ||||||||||| Sbjct 748447 TTCACGAATATTTGCAT 748431 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| ||||| || || ||||| || || | |||| || ||||| || || Sbjct 748855 GTGGACTCCTTCTGAATATTGTAATCCGCGAGAGTACGTCCGTCTTCGAGCTGCTTACCG 748796 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || |||||||||||||| || | || || || || ||||||| ||| Sbjct 748795 GCAAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCTTTATCTTGGATCTTTGCTTTG 748736 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || ||| | ||| ||| | ||| ||||| |||||||| || || Sbjct 748735 ACGTTGTCGATGGTGTCAGAGCTCTCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTC 748676 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 748675 TTGACAAAGATCTGCAT 748659 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | || |||| ||| | ||| |||||||| || ||||| || || | Sbjct 749343 TTCCGCCACGAAGACGAAGAACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAG 749284 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 |||| || | | ||||| |||||||| || || | || |||||||||||||| | Sbjct 749283 CCAGAGTCCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGCTGGTCTGGCG 749224 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| ||||| ||||| | | | | || ||| | ||| Sbjct 749223 GGATCCCTTCCTTGTCTTGAATCTTCGCCTTCACGTTGTCAATTGTGTCAGAGCTCTCAA 749164 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||||| || ||||| | || ||||| || || ||||| Sbjct 749163 CCTCGAGAGTAATGGTTTTTCCGGTGAGGGTCTTGACGAAAATCTGCAT 749115 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | || |||||||| || ||||| || ||||| || || | ||||| Sbjct 749098 AGAACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCAAGCGTGCGACCGTCC 749039 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || || | || ||||||||||| || || | ||||||||||| Sbjct 749038 TCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCC 748979 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| || || | ||| || ||| | ||| |||| ||||| ||| Sbjct 748978 TGAATCTTAGCCTTGACGTTATCGATCGTGTCAGAGCTCTCAACCTCCAAAGTAATAGTC 748919 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || || || |||||||| || ||||| Sbjct 748918 TTTCCTGTCAAAGTCTTGACAAAGATCTGCAT 748887 >seq20422 Length=233597 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | ||| ||||| ||||||||||||||||| ||||| || Sbjct 130681 CCACCACGGAGCCTGAGAACAAGATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCGGCT 130622 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | |||| || ||||| ||||| || | || || |||||||| ||| || Sbjct 130621 AAGGTGCGACCGTCTTCGAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCCGGAGGG 130562 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || || || ||||||| || || | | ||| || || | || Sbjct 130561 ATACCCTCTTTATCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCGGAGCTTTCAACC 130502 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||| ||||| | || || ||||| || ||||| Sbjct 130501 TCCAAAGTGATGGTCTTTCCGGTGAGAGTCTTAACAAAGATCTGCAT 130455 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||||||||| || || ||||| |||| ||| | |||| || ||||| || || Sbjct 130879 GTGGACTCCTTTTGGATATTGTAGTCAGCCAATGTTCTGCCGTCTTCAAGCTGCTTCCCA 130820 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || | ||||||||||||| || | || |||||||| |||||| || Sbjct 130819 GCGAAGATCAATCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCTTGAATCTTTGCCTTA 130760 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| |||||| | ||| |||| || || ||||| ||||| || || Sbjct 130759 ACATTGTCGATGGTATCAGAGCTCTCAACCTCCAAAGTGATAGTCTTTCCGGTCAATGTC 130700 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 130699 TTGACAAAGATCTGCAT 130683 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | || |||||||| |||||||| ||||| || Sbjct 131593 CCACCACGAAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCT 131534 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | | ||||| ||||| || || ||| | || || | |||||||||| || Sbjct 131533 AAGGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGG 131474 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||| || |||||| ||||| | | | || || | |||| Sbjct 131473 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTATCAATCGTGTCGGAGCTCTCCACC 131414 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||||||||| | ||| || ||||| || ||||| Sbjct 131413 TCCAGTGTGATGGTCTTGCCGGTAAGCGTCTTCACAAAGATCTGCAT 131367 >seq19630 Length=159711 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/194 (71%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 20986 CCTTT-TGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAA 21044 ||||| || ||||| ||||| |||| || || | || || |||||||| || || | Sbjct 121542 CCTTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTTCCGGCGAAG 121601 Query 21045 ATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGG 21104 || ||||||||||| ||| || | ||||| ||||| |||||| || || | | Sbjct 121602 ATCAGTCTCTGCTGATCCGGAGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTG 121661 Query 21105 CCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACA 21164 ||| || ||| || ||| || | ||| |||||||||||||||| ||||| || Sbjct 121662 TCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACG 121721 Query 21165 AATATTTGCATTTT 21178 || || ||||| || Sbjct 121722 AAGATCTGCATCTT 121735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422149290812612