Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq19979 89.7 4e-13 seq20655 86.0 5e-12 seq19059 86.0 5e-12 seq19364 82.4 6e-11 >seq19979 Length=600886 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| || || |||||||| || || || || ||||||||| ||| |||||||| Sbjct 474405 GATCAGCAGAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGATGGACGTACTTTGGCCGAT 474464 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 |||||||| || |||||||||||||| ||| |||| ||| Sbjct 474465 TACAATATCCAGAAGGAATCTACTCTCCACTTGGTCTTA 474503 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| || || ||||||||||| || || || |||||||| | ||| |||||||| Sbjct 464767 GATCAGCAGAGGCTTATCTTTGCTGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGAT 464826 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||||| || || |||||||||||||| || ||||| || Sbjct 464827 TACAACATCCAGAAGGAATCTACTCTCCATTTGGTGCTA 464865 >seq20655 Length=190867 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | || ||||| ||||| |||||||| || || || || |||||| Sbjct 174578 GATAAGGAAGGCATTCCTCCGGATCAGCAAAGGCTTATCTTCGCCGGTAAGCAGTTGGAA 174519 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || | ||| | |||||||||||||| || ||||| || ||||| ||| ||||||| Sbjct 174518 GACGGCCGTACTTTAGCCGATTACAATATCCAGAAGGAGTCGACTCTCCACTTGGTGTTG 174459 Query 25248 CG 25249 || Sbjct 174458 CG 174457 >seq19059 Length=274371 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | || ||||| ||||| |||||||| || || || || |||||| Sbjct 258082 GATAAGGAAGGCATTCCTCCGGATCAGCAAAGGCTTATCTTCGCCGGTAAGCAGTTGGAA 258023 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || | ||| | |||||||||||||| || ||||| || ||||| ||| ||||||| Sbjct 258022 GACGGCCGTACTTTAGCCGATTACAATATCCAGAAGGAGTCGACTCTCCACTTGGTGTTG 257963 Query 25248 CG 25249 || Sbjct 257962 CG 257961 >seq19364 Length=374643 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| ||||| ||||||||||| || || || | |||||| ||| |||| ||| Sbjct 235729 GATCAGCAAAGGCTTATCTTTGCCGGTAAGCAGCTTGAAGATGGACGTACTTTGGCTGAT 235670 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 |||| ||||||||||||||| ||||| ||| |||| Sbjct 235669 TACAGTATTCAAAAGGAATCGACTCTCCACTTGGT 235635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410689874342798