Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq19402 95.1 8e-15 seq18862 82.4 5e-11 >seq19402 Length=197664 Score = 95.1 bits (104), Expect = 8e-15 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 97072 TGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATC 97131 |||||||| || | | || ||||| || |||||||| | || | ||| || | | Sbjct 22539 TGAGCATCACCAATAACATGGATAAAATCACCAGGAACAAGATTGCACAAATGAGCTAGC 22598 Query 97132 ATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCT 97191 || || || | ||||||||| |||||||||||| ||||| || |||||||| || ||| Sbjct 22599 ATGCACGTAAGAAGAGAATAGGAAGCAATGTTAAACGGCACACCAAGTCCCATGTCCGCT 22658 Query 97192 GATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTG 97241 || | ||||| | ||||| || |||| || || |||||| ||||| Sbjct 22659 GAACGCTGATACATTTGACATGAGAGCTCCCCTTCTGCCACATAGAACTG 22708 >seq18862 Length=32547 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/200 (70%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 97072 TGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATC 97131 |||||||| || | | | ||||| || |||||||| | || || || || | | Sbjct 12059 TGAGCATCACCAATAACAAGGATAAAATCACCAGGAACAAGATTGCACACGTGAGCTAGC 12000 Query 97132 ATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCT 97191 || | || | ||||| ||| |||||||||||| ||||| || |||||||| || || Sbjct 11999 ATGCTCGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGTCCCATGTCCACT 11940 Query 97192 GATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACA 97251 || | ||||| ||||| || |||| ||| || |||||||||||| ||| | | Sbjct 11939 GAACGCTGATACGTTTGACATGAGAGCTCTCCTTCTGCCACATAAAACTG-TGCAACATA 11881 Query 97252 TGACAGGGGGGCAACGCCAT 97271 || || || || | ||||| Sbjct 11880 TGGCATGGAGGAAGTGCCAT 11861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346693736134490