Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq20655 100 4e-16 seq19059 100 4e-16 seq21172 98.7 1e-15 seq19364 95.1 2e-14 seq21007 89.7 8e-13 seq19979 89.7 8e-13 >seq20655 Length=190867 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || || || ||||| ||| | ||| | || | Sbjct 174443 ATGCAGATTTTCGTCAAGACTTTGACCGGAAAGACTATTACTTTGGAGGTGGAGAGTTCT 174384 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || ||||||||||| || || || ||||| || || Sbjct 174383 GACACTATTGACAATGTCAAGGCTAAGATTCAAGATAAGGAGGGAATCCCACCGGACCAG 174324 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||| | || ||||||||||| ||| | |||||| | || || | | || |||||| Sbjct 174323 CAAAGGTTGATCTTTGCAGGAAAGCAACTCGAGGATGGCCGTACTCTTGCTGACTATAAT 174264 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || || ||||| ||| | || | | | || |||||||| Sbjct 174263 ATTCAAAAGGAGTCGACTTTACATCTCGTCCTCAGGCTCCGTGGTGGTAT 174214 Score = 96.9 bits (106), Expect = 5e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||| ||||| ||||| || || || ||||| ||||||||||| || || || || Sbjct 174587 AAGATTCAGGATAAGGAAGGCATTCCTCCGGATCAGCAAAGGCTTATCTTCGCCGGTAAG 174528 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || || || || | || || |||| ||||| ||||| || || || || ||| | || Sbjct 174527 CAGTTGGAAGACGGCCGTACTTTAGCCGATTACAATATCCAGAAGGAGTCGACTCTCCAC 174468 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||| | || |||||||| Sbjct 174467 TTGGTGTTGCGTCTCCGTGGTGGTAT 174442 >seq19059 Length=274371 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || || || ||||| ||| | ||| | || | Sbjct 257947 ATGCAGATTTTCGTCAAGACTTTGACCGGAAAGACTATTACTTTGGAGGTGGAGAGTTCT 257888 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || ||||||||||| || || || ||||| || || Sbjct 257887 GACACTATTGACAATGTCAAGGCTAAGATTCAAGATAAGGAGGGAATCCCACCGGACCAG 257828 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||| | || ||||||||||| ||| | |||||| | || || | | || |||||| Sbjct 257827 CAAAGGTTGATCTTTGCAGGAAAGCAACTCGAGGATGGCCGTACTCTTGCTGACTATAAT 257768 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || || ||||| ||| | || | | | || |||||||| Sbjct 257767 ATTCAAAAGGAGTCGACTTTACATCTCGTCCTCAGGCTCCGTGGTGGTAT 257718 Score = 96.9 bits (106), Expect = 5e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||| ||||| ||||| || || || ||||| ||||||||||| || || || || Sbjct 258091 AAGATTCAGGATAAGGAAGGCATTCCTCCGGATCAGCAAAGGCTTATCTTCGCCGGTAAG 258032 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || || || || | || || |||| ||||| ||||| || || || || ||| | || Sbjct 258031 CAGTTGGAAGACGGCCGTACTTTAGCCGATTACAATATCCAGAAGGAGTCGACTCTCCAC 257972 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||| | || |||||||| Sbjct 257971 TTGGTGTTGCGTCTCCGTGGTGGTAT 257946 >seq21172 Length=998197 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || ||||||||||||||||| |||||||| ||||| || ||||| || || ||| | Sbjct 271860 CAGGACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGTAAGCAACTG 271919 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| | |||||| ||| ||||| || || || ||||| || ||| | ||| | || Sbjct 271920 GAAGATGGACGAACACTAGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTCGTC 271979 Query 124749 TTACGTTTACGAGGTGGTATTA 124770 || | | ||||||||| || Sbjct 271980 TTGAGGCTCAGAGGTGGTACTA 272001 >seq19364 Length=374643 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| ||||||| || || ||||| | || ||| | ||| ||||| | | Sbjct 235843 ATGCAGATCTTTGTAAAGACTCTTACTGGCAAGCCGATGACTCTCGAGGTTGAA--AGCT 235786 Query 124599 GATACAATTTCTA--ATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| | || | | | || || ||||| || || ||||| || | || |||| Sbjct 235785 CCGACACTGTCGACAACGTTAAGGCTAAGATTCAGGACAAGGAAGGGATTACTCCGGATC 235726 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | ||||||||||| ||||| || || || | || ||| | || || || | ||||| | Sbjct 235725 AGCAAAGGCTTATCTTTGCCGGTAAGCAGCTTGAAGATGGACGTACTTTGGCTGATTACA 235666 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTT 124756 ||||||||| ||||| ||| | || |||||| | ||||| Sbjct 235665 GTATTCAAAAGGAATCGACTCTCCACTTGGTTCTGCGTTT 235626 >seq21007 Length=954693 Score = 89.7 bits (98), Expect = 8e-13 Identities = 167/245 (68%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 205483 GCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTA 205542 |||| ||||| |||||||| | ||||||||||||||| | |||||||||||||||| | Sbjct 134449 GCAATGTTAAACGGTACACCAAGACCCATATCAGCTGAGCGCTGATACATTTGACATGAA 134390 Query 205543 AGATATTTATTATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATA 205602 || | | ||| | |||| ||| || |||| || || || || | |||| Sbjct 134389 AGCTCTCCATTTGCA---ACATAAAACTGCGCAAACATGTGGCATGGAGGAAGTGCCATC 134333 Query 205603 TTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattt 205662 | || || ||||||||| || | | |||||| || | ||||| || || Sbjct 134332 AGCTTAAGGTCAGAAGGATTCCAAGCCGACATTATTATCCGTCGATCATCAGGATTGTTC 134273 Query 205663 tttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCC 205722 || || || || || | || | | |||||||||||||| | ||||||| | || | Sbjct 134272 TTGATCTTGTTAATTACATCTAAGAGCTGATCAAATCCTTGGTCAGTATAATCAGCATGC 134213 Query 205723 ATATC 205727 ||||| Sbjct 134212 ATATC 134208 >seq19979 Length=600886 Score = 89.7 bits (98), Expect = 8e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 124615 TAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTG 124674 ||||| ||||||||||| ||||||||||| || || || || || | || || || | Sbjct 465413 TAAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCGGACCAGCAGCGTCTCATCTTCG 465472 Query 124675 CAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAA 124734 | || || || | |||||| |||| ||||| | ||||| || || || || || || | Sbjct 465473 CTGGCAAGCAGCTCGAGGATGGTCGCACATTGGCCGATTACAACATCCAGAAGGAGTCGA 465532 Query 124735 CTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | | || ||||| || ||| | || |||||||| Sbjct 465533 CCCTTCACTTGGTCTTGCGTCTCCGTGGTGGTAT 465566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755254321577600