Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq20422 116 2e-21 seq19776 111 1e-19 seq19979 105 4e-18 seq19135 91.5 1e-13 seq19630 87.8 1e-12 seq20655 86.0 4e-12 seq19059 86.0 4e-12 >seq20422 Length=233597 Score = 116 bits (128), Expect = 2e-21 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG-A 34221 || || || ||||| || || || |||||||| || || || ||||||||||||| Sbjct 130681 CCACCACGGAGCCTGAGAACAAGATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCGGCT 130622 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACG 34279 || || || |||| || | ||||||||| ||||| ||||||| |||||| || || | Sbjct 130621 AAGGTG-CGACCGTCTTCGAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCCGGAGG 130563 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 | || |||| || || |||||| ||| | | | | || | |||| ||| Sbjct 130562 GATACCCTCT--TTATCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCGGAGCTTTCA 130505 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || |||| |||||||| || ||||||||||| || ||||||||||||||| Sbjct 130504 ACCTCCAAAGTGATGGTCTTTCCGGTGAGAGTCTTAACAAAGATCTGCATC 130454 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 || ||||| ||||||||||||| | | || || | || || | |||||| || || || Sbjct 131557 TCCTTCTGAATGTTGTAGTCGGCTAAGGTG-CGACCATCCTCAAGCTGCTTTCCAGCAAA 131499 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| ||||||||||| || | || ||||| || ||||| ||| | | Sbjct 131498 GATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTT 131439 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | |||| |||| || || |||| |||||||| |||||||| || || ||||| Sbjct 131438 ATCAATCGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTTGCCGGTAAGCGTCTTCAC 131379 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 131378 AAAGATCTGCAT 131367 >seq19776 Length=1148151 Score = 111 bits (122), Expect = 1e-19 Identities = 171/240 (71%), Gaps = 3/240 (1%) Strand=Plus/Minus Query 34153 TTCGTCGAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTT 34212 ||| ||| | || || || || | |||||||| || | || || ||||| ||||| Sbjct 756067 TTCTTCGCA-CCACCACGGAGACGGAGCACCAGATGAAGCGTCGACTCCTTCTGGATGTT 756009 Query 34213 GTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTG 34272 |||||||| || ||| |||| |||| ||| || || |||||||| | | |||||| Sbjct 756008 GTAGTCGGCGAGTGTACGCCCGTCTTCCAGCTGTTTCCCGGCGAAAATCAATCTCTGCTG 755949 Query 34273 GTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGG 34331 ||| || | | ||||||||| ||||| ||||| | || | | |||| || | Sbjct 755948 GTCCGGTGGGATTCCCTCCTTGTCTTGGATCTTC-GCTTTCACATTGTCGATCGTGTCCG 755890 Query 34332 TCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 |||||| || || | |||||||| || || || || |||||||| ||||||||||||| Sbjct 755889 ACGATTCCACCTCGAGTGTGATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCG 755830 >seq19979 Length=600886 Score = 105 bits (116), Expect = 4e-18 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| ||||||| || | |||| ||| ||||| |||||||| |||| | Sbjct 464879 CCACCACGGAGCCTTAGCACCAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGCC 464820 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| |||| ||||||||||| || || || || |||| |||||| || || Sbjct 464819 AAAGTACGGCCGTCTTCCAACTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGA 464760 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC-GA---TTC 34338 | || |||||| || ||| || |||||| | | |||| | ||| || ||| Sbjct 464759 ATGCCCTCCTTATCCTGGATC-TTGGCTTTA---ACGTTGTCGATTGTGTCAGAACTTTC 464704 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || | ||||| || || |||||||| || || || |||||||||||| Sbjct 464703 CACCTCAAGGGTGATAGTCTTTCCGGTGAGTGTCTTGACGAAGATCTGCATC 464652 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || ||||| |||| ||| | |||| ||| ||||| ||||||||||| | Sbjct 474745 CCACCACGGAGTCTCAGGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCAGCA 474686 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| |||| ||||||||||| || ||||| || | | ||||||||| || Sbjct 474685 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGG 474626 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC-GA---TTC 34338 | | |||||| || || ||| || || || | |||||| ||| || || Sbjct 474625 ATTCCCTCCTTATCTTGAAT-TTTCGCCTT-GA--CGTTATCGATGGTGTCAGAACTCTC 474570 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | ||||| || || ||||||||||| || || ||||||||||| Sbjct 474569 CACCTCGAGTGTGATCGTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 474519 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| | |||| ||| | |||| ||| ||||| || ||||| |||| | Sbjct 474517 CCACCACGGAGCCTTAAGACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAATCGGCC 474458 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || ||||||||||| || ||||| || |||| |||||| || | Sbjct 474457 AAAGTACGTCCATCTTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGTA 474398 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC-GA---TTC 34338 | || |||||| || ||| || ||||| || | | |||| | ||| || ||| Sbjct 474397 ATGCCCTCCTTATCCTGAATC-TTGGCTTT-GA--CGTTGTCGATTGTGTCAGAGCTTTC 474342 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || | ||||| || || |||||||| || || || |||||||||||| Sbjct 474341 CACCTCAAGGGTGATAGTCTTTCCGGTGAGTGTCTTGACGAAGATCTGCATC 474290 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || ||||||||||||| || || | || || | |||||| || ||||| Sbjct 475165 TCCTTTTGAATGTTGTAGTCGGCTAGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAG 475106 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| ||||| ||||| || | || |||||||| ||||| ||| | || | Sbjct 475105 ATGAGACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTG 475046 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| || || |||| ||||| || || |||||||| || || ||| Sbjct 475045 TCAATGGTGTCGGAACTCTCAACCTCCAGTGTGATCGTCTTACCGGTGAGGGTCTTGACA 474986 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 474985 AAGATCTGCAT 474975 >seq19135 Length=1448613 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||||| || || |||| || | |||||| || ||||| Sbjct 1071208 TTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGTCCGTCTTCGAGCTGCTTTCCGGCGAA 1071149 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || | ||||||||||| || | | |||||||| ||||| ||| | || Sbjct 1071148 TATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTCACATT 1071089 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | |||| || | || ||||| || | ||||| || || || || || |||||||| Sbjct 1071088 GTCGATCGTGTCTGATGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCAC 1071029 Query 34378 AAAGATCTGCATC 34390 |||||||||||| Sbjct 1071028 GAAGATCTGCATC 1071016 >seq19630 Length=159711 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34200 CTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAA 34259 ||||||| ||||||||||| | || |||| | || || | ||| || || ||||| | Sbjct 121543 CTTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTTCCGGCGAAGA 121602 Query 34260 TGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGG 34319 | || | |||||| || || | | || ||||| ||||| ||| | || | Sbjct 121603 TCAGTCTCTGCTGATCCGGAGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTGT 121662 Query 34320 CTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAA 34379 | || | || | || ||||| || | |||||||| |||||||| || |||||||| | Sbjct 121663 CGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGA 121722 Query 34380 AGATCTGCATC 34390 ||||||||||| Sbjct 121723 AGATCTGCATC 121733 >seq20655 Length=190867 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || ||||| ||| | ||| || ||||| || ||||| |||| Sbjct 174445 CCACCACGGAGACGCAACACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAATCGGCT 174504 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| |||| ||||||||||| || ||||| || |||| ||||| || || Sbjct 174505 AAAGTACGGCCGTCTTCCAACTGCTTACCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 174564 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || ||| || ||||| | | | | |||| || | ||| || Sbjct 174565 ATGCCTTCCTTATCCTGAATC-TTGGCTTTAACGTTGTCGATCGTGTCAGAGCTTTCCAC 174623 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || ||||||||||| || || |||||||||||| Sbjct 174624 CTCGAGGGTGATCGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCATC 174672 >seq19059 Length=274371 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || ||||| ||| | ||| || ||||| || ||||| |||| Sbjct 257949 CCACCACGGAGACGCAACACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAATCGGCT 258008 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| |||| ||||||||||| || ||||| || |||| ||||| || || Sbjct 258009 AAAGTACGGCCGTCTTCCAACTGCTTACCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 258068 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || ||| || ||||| | | | | |||| || | ||| || Sbjct 258069 ATGCCTTCCTTATCCTGAATC-TTGGCTTTAACGTTGTCGATCGTGTCAGAGCTTTCCAC 258127 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || ||||||||||| || || |||||||||||| Sbjct 258128 CTCGAGGGTGATCGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCATC 258176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322987908093920