Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq19979 122 7e-23 seq20422 107 2e-18 seq19776 96.9 3e-15 seq19135 93.3 3e-14 seq18594 93.3 3e-14 >seq19979 Length=600886 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || |||||| |||||||||||||| || || | || Sbjct 465320 AAGACCAAGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCGAGAGTACGCCCATCT 465261 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || ||||| |||||||| || ||||||| ||| ||||| ||||| | ||||||||||| Sbjct 465260 TCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCT 465201 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || || || | | | |||| || ||||||||||| ||||| ||| Sbjct 465200 TGGATCTTGGCTTTGACATTGTCAATGGTGTCAGAACTCTCCACCTCCAAAGTAATGGTC 465141 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||| ||||| |||||||||||||| Sbjct 465140 TTTCCCGTCAACGTCTTGACAAAGATTTGCAT 465109 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || |||||| ||||||||||||||| ||| |||| | || Sbjct 475186 AAGACCAAGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGTGTGCGACCATCC 475127 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || ||||| ||||| || | ||||||||||| ||||| | || ||||||||| Sbjct 475126 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCCGGAGGGATGCCTTCCTTGTCC 475067 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || ||| || | | | |||| || ||| ||||||| || |||||| Sbjct 475066 TGGATCTTAGCCTTGACATTGTCAATGGTGTCGGAACTCTCAACCTCCAGTGTGATCGTC 475007 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||| |||||||| ||||| Sbjct 475006 TTACCGGTGAGGGTCTTGACAAAGATCTGCAT 474975 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | | ||| | |||||||| || || |||||||| ||||||||||| Sbjct 474745 CCACCACGGAGTCTCAGGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCAGCA 474686 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || |||| |||| || ||||||||||| ||||| | ||| ||||| || || Sbjct 474685 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGG 474626 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||| || |||||| ||| || | | | |||| || ||||||| Sbjct 474625 ATTCCCTCCTTATCTTGAATTTTCGCCTTGACGTTATCGATGGTGTCAGAACTCTCCACC 474566 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || |||||||| || || |||||||| || ||||| ||||| Sbjct 474565 TCGAGTGTGATCGTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 474519 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGTC 45186 |||||||| || || ||||||||| ||||||||||| | | || | |||| | || || Sbjct 466001 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAAGGT-GCGACCATCCTC 465943 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || ||||| ||||| || | ||||| ||||| ||||| | || ||||||||| Sbjct 465942 GAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTG 465883 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||| || ||| || | | | |||| | ||||||||||| || || ||||| Sbjct 465882 AATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTT 465823 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||||| || || ||||| Sbjct 465822 ACCGGTCAAGGTCTTCACGAAAATCTGCAT 465793 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || ||||| || || || ||||||||| ||||||||||| |||| |||| | || Sbjct 465776 AACACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGACCATCC 465717 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || ||||| ||||| || | ||||| ||||| || || | || ||||||||| Sbjct 465716 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCC 465657 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| || ||| || | | | |||| || ||| || || | || |||||| Sbjct 465656 TGAATCTTAGCCTTCACGTTATCAATGGTGTCAGAACTCTCAACTTCAAGAGTGATCGTC 465597 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||| ||||| || || || ||||| Sbjct 465596 TTTCCCGTCAAGGTCTTAACGAAAATCTGCAT 465565 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||| || |||| ||| | || || Sbjct 475411 ACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCAGCCAGTGTACGACCATCCTCA 475352 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| || | ||||| ||||| ||||| | || ||||||||| Sbjct 475351 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGG 475292 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| || || | ||| || ||||| Sbjct 475291 ATCTTGGCCTTCACGTTATCAATGGTGTCAGAGCTCTCAACTTCGAGGGTGATTGTCTTT 475232 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| |||||||| ||||| Sbjct 475231 CCGGTAAGGGTCTTGACAAAGATCTGCAT 475203 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || || | || || ||||| |||||||| || Sbjct 465072 CTCCTTCTGGATGTTGTAGTCAGCGAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCAAA 465013 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| ||||| || || | |||||||| || || || ||| || Sbjct 465012 GATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCTTGGATCTTAGCCTTGACGTT 464953 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| || ||||||||| | || |||||||| || || |||||||| || Sbjct 464952 GTCGATGGTGTCAGAACTCTCCACCTCAAGAGTGATCGTCTTTCCGGTGAGAGTCTTGAC 464893 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 464892 GAAGATCTGCAT 464881 >seq20422 Length=233597 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 ||||||||||| || ||| |||||| || || |||||||| || | | |||| Sbjct 130894 AATACCAAGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCAGCCAATGTTCTGCCGTCT 130835 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || || ||||| ||||| | ||| ||||| ||||| | |||||||||||| Sbjct 130834 TCAAGCTGCTTCCCAGCGAAGATCAATCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCT 130775 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| ||| |||||| | | | | || | ||| ||||||| || || ||| Sbjct 130774 TGAATCTTTGCCTTAACATTGTCGATGGTATCAGAGCTCTCAACCTCCAAAGTGATAGTC 130715 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||| ||||| |||||||| ||||| Sbjct 130714 TTTCCGGTCAATGTCTTGACAAAGATCTGCAT 130683 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| ||||| |||||||||||| ||||| ||| || |||| | || Sbjct 131122 AACACCAAGTGAAGCGTAGACTCCTTCTGAATATTGTAATCGGCCAAAGTGCGACCATCC 131063 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || ||||| ||||| || | ||||| || || ||||| | |||||| |||||| Sbjct 131062 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGAATACCCTCTTTGTCC 131003 Query 45245 GCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 | | || |||| | || | | | |||| | || ||||||| || || || Sbjct 131002 TGGA-TCTTGGCTTTAACGTTGTCAATAGTGTCGGAGCTTTCAACCTCCAAAGTGATAGT 130944 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| |||||||| ||||| |||||||| ||||| Sbjct 130943 CTTTCCCGTCAGGGTCTTGACAAAGATCTGCAT 130911 Score = 107 bits (118), Expect = 2e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG--TTCAGTTGGCGATCGT 45182 || |||||||| || || |||||||||||||||||||||| | ||| |||| | | Sbjct 131350 AACACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCGGCTAAAGT--GCGACCAT 131293 Query 45183 CGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGT 45242 | || || || ||||| ||||| || | ||||| ||||| ||||| | ||| ||||| | Sbjct 131292 CCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCCTTAT 131233 Query 45243 CCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCG 45302 || || || ||| || | | | |||| | ||| ||||| | ||| || | Sbjct 131232 CCTGTATCTTGGCCTTGACGTTATCGATGGTGTCAGAGCTCTCTACCTCGAGGGTTATTG 131173 Query 45303 TCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| || |||| ||||| |||||||| |||||| Sbjct 131172 TCTTACCAGTCAAGGTCTTGACAAAGATCTGCATG 131138 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203 |||||| |||||||||||||| | | || | |||| |||| || || || || || |||| Sbjct 130646 CTCCTTTTGAATGTTGTAGTCGGCTAAGGT-GCGACCGTCTTCGAGCTGCTTGCCAGCGA 130588 Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263 | || | || ||| || || ||||| | |||||| || ||| || ||| ||| || Sbjct 130587 AGATGAGCCTCTGCTGATCCGGAGGGATACCCTCTTTATCCTGGATCTTTGCCTTGACGT 130528 Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | |||| | || ||||||| || || ||||| || || |||||||| | Sbjct 130527 TGTCGATGGTGTCGGAGCTTTCAACCTCCAAAGTGATGGTCTTTCCGGTGAGAGTCTTAA 130468 Query 45324 CAAAGATTTGCAT 45336 ||||||| ||||| Sbjct 130467 CAAAGATCTGCAT 130455 >seq19776 Length=1148151 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/215 (70%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || ||||| ||||||||| |||||||||||| ||| || |||| ||| Sbjct 756040 ACCAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTACGCCCGTCTTCC 755981 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| |||||||| ||||| | ||| ||||| || || | ||||||||||| Sbjct 755980 AGCTGTTTCCCGGCGAAAATCAATCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGG 755921 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || || || | | ||||| |||||||| | || || ||||| Sbjct 755920 ATCTTCGCTTTCACATTGTCGATCGTGTCCGACGATTCCACCTCGAGTGTGATGGTCTTC 755861 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT-GTTGC 45341 ||||| || || ||||| ||||| ||||| ||||| Sbjct 755860 CCCGTTAGGGTTTTCACGAAGATCTGCATCGTTGC 755826 >seq19135 Length=1448613 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||| || ||| |||| || || || |||||||||||| Sbjct 1071207 TCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGTCCGTCTTCGAGCTGCTTTCCGGCGAAT 1071148 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| ||||| ||||| || || | || |||||||| || || ||| || Sbjct 1071147 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTCACATTG 1071088 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| ||| ||||| | ||| || ||||| ||||| || || ||||| Sbjct 1071087 TCGATCGTGTCTGATGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACG 1071028 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 1071027 AAGATCTGCAT 1071017 >seq18594 Length=163332 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 8/140 (6%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| || | || || |||||||| || ||| ||||||||| ||||||||| | Sbjct 33718 GCCACCCCTGAGCCTCAAAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAG----T 33773 Query 45169 CAGTTGGCGATCG----TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGG 45224 ||| | ||| ||| || |||||||| || || |||||||||| || |||||| || | Sbjct 33774 CAGCTAGCGTTCGACCATCCTCCAGTTGCTTCCCAGCGAATATCAGCCTCTGTTGATCCG 33833 Query 45225 GAGGCACACCCTCCTTGTCC 45244 | || | ||||| |||||| Sbjct 33834 GTGGGATCCCCTCTTTGTCC 33853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394972366493497