Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq21007 136 8e-27 seq19402 111 3e-19 seq18862 93.3 8e-14 >seq21007 Length=954693 Score = 136 bits (150), Expect = 8e-27 Identities = 151/198 (76%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| |||||| || |||| || ||| |||| ||||||||| || ||| | | Sbjct 134272 AGAACAATCCTGATGATCGACGGATAATAATGTCGGCTTGGAATCCTTCTGACCTTAAGC 134331 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| |||||||||||||||||| ||| || |||||||| || |||||||| | | Sbjct 134332 TGATGGCACTTCCTCCATGCCACATGTTTGCGCAGTTTTATGTTGCAAATGGAGAGCTTT 134391 Query 35637 CGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 | || || |||||||||| ||| || ||| || | || || || || || ||||| Sbjct 134392 CATGTCAAATGTATCAGCGCTCAGCTGATATG--GGTCTTGGTGTACCGTTTAACATTGC 134449 Query 35695 ATCATACTCTCTTCTGAC 35712 |||||||| ||||| || Sbjct 134450 CTCATACTCCCTTCTTAC 134467 >seq19402 Length=197664 Score = 111 bits (122), Expect = 3e-19 Identities = 178/251 (71%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 35465 GATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAA-AA 35523 ||||||||||| | || |||||||| | || || || | | | | | |||| || Sbjct 22852 GATTATACTGGCCAAGGATTTGATCAACTCGCAGATGTAATTGACAAAATCA-AGAACAA 22794 Query 35524 TCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGC 35583 ||| |||||| | | || || || |||| ||||||||| ||||| | | ||||| Sbjct 22793 TCCTGATGATCGGCGTATTATACTGTCGGCTTGGAATCCTTCTGATCTCAAGTTGATGGC 22734 Query 35584 TCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCA 35643 |||||||||||||| ||| ||| || || |||||||| | || || | || || || Sbjct 22733 ACTTCCTCCATGCCATATGTTTGCACAGTTCTATGTGGCAGAAGGGGAGCTCTCATGTCA 22674 Query 35644 GTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATAC 35701 |||||||||| |||||| ||| || | || ||||| || || ||||| || || Sbjct 22673 AATGTATCAGCGTTCAGCGGACATG--GGACTTGGTGTGCCGTTTAACATTGCTTCCTAT 22616 Query 35702 TCTCTTCTGAC 35712 |||||||| || Sbjct 22615 TCTCTTCTTAC 22605 >seq18862 Length=32547 Score = 93.3 bits (102), Expect = 8e-14 Identities = 142/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| |||||| | | || || | |||| ||||||| ||||| | Sbjct 11799 AGAACAATCCTGATGATCGGCGTATTATACTATCGGCTCGGAATCCGTCTGATCTCAAGT 11858 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| |||||||||||||| ||| ||| || ||||||||||| | ||||| | | Sbjct 11859 TGATGGCACTTCCTCCATGCCATATGT-TGCACAGTTTTATGTGGCAGAAGGAGAGCTCT 11917 Query 35637 CGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 | || || ||||||||| || ||| ||| || | || ||||| || || ||||| Sbjct 11918 CATGTCAAACGTATCAGCGTTCAGTGGACATG--GGACTTGGTGTGCCGTTTAACATTGC 11975 Query 35695 ATCATACTCTCTTCTGAC 35712 || ||||||||||| || Sbjct 11976 TTCCTACTCTCTTCTTAC 11993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989313213635935