Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq20199 176 6e-39 seq19642 86.0 8e-12 >seq20199 Length=1256174 Score = 176 bits (194), Expect = 6e-39 Identities = 403/599 (67%), Gaps = 6/599 (1%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || |||||||||||||| | || ||||||| || || ||||| || || || | Sbjct 343416 CAGGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATCAACTCGTTGGAGAAAGTCAAC 343475 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || || || || ||||| || || || ||| || || |||||| Sbjct 343476 CCAGGCATGAGACCTCGTTTCTTGAGCCAGAAGATTGAGCAGAAGCTGCCTGAGAAGAAG 343535 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC-TCCATAACCGGCGCTGTCATGTAT 33760 || ||||| || ||| ||||| | | |||||| | | | | | | | ||| || Sbjct 343536 ATACCTTCGACGCAAGCGAAGGCGACGATTCTCTCAGCGAAAGTCTGAGAT-CCATCGAT 343594 Query 33761 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 |||||| ||||| | ||| || || || ||||| || ||||| ||||| ||| Sbjct 343595 CCACTTCATGGCCCATTGGGCTTTTTTAGCGACGCAAGGGATTGTTTCGATGGCCCGAAA 343654 Query 33821 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33880 ||||| || | | || || | ||||| | ||||| |||| | ||||| ||||| || Sbjct 343655 GAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGGAGGAGACTGTACATCTC 343714 Query 33881 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 33940 ||| || || || ||||| || ||||| || ||||||||| | || || | | || Sbjct 343715 CGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCTTCAGAGACTTG 343774 Query 33941 CACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAA 33999 ||| || | ||| || ||| || | ||| || || ||||| ||| || || | Sbjct 343775 CACATC-GGACATGAACCGTGAAGCGAGATTCTCGAGAACGATTCCGTCAGATGCGGCGA 343833 Query 34000 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCA 34058 | || || | || ||||| || || | | || || | ||| || || | ||| || Sbjct 343834 AGAAAGCGAGGACGTGTTTGATGAAGTGCCTCTC-TCCGTCGTTGAGATTCTCCCAGTCG 343892 Query 34059 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 34118 |||| ||||| ||| |||||||| | ||||| || ||||| || || || || Sbjct 343893 CGACCGTCTTGAGATAGATCGACTTCTTCAGCCGTCCAGAAAGATGCTTCGGCTTTCTTG 343952 Query 34119 TACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGG 34177 ||||| | |||||| | | | || ||||||||||| ||| ||||| | ||| |||| Sbjct 343953 TACATCTCCCAGATCTGAGGGTAGTGGATTGGGAACATACAGAATCTGTCTGGGGTTGG 344011 >seq19642 Length=374925 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| ||||| | || | ||| || | || |||| | || ||| |||| |||||| Sbjct 361682 TCCTCCTTGATCGACATAACGAGCAGTATCGTTGAAAACACGCAGCATAGGAACAATACC 361741 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || || | ||||| || || || || | |||| | ||||| |||||| || ||| Sbjct 361742 ATTAGACGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATATTATGAACTGA 361801 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| || || || || ||| || | || || ||| | || ||||| || Sbjct 361802 GACACCAATACCTCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 361861 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 |||||| ||||||||||| ||||| | ||||||||||| Sbjct 361862 GCCTTCAATGCTATCATCTTTCATGCAGATCAGAAAACAGCT 361903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629649462318960