Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq20199 140 4e-28 seq19642 95.1 2e-14 >seq20199 Length=1256174 Score = 140 bits (154), Expect = 4e-28 Identities = 388/587 (66%), Gaps = 6/587 (1%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || |||||||||||||||| || ||||||| || || |||||||| || || | Sbjct 343416 CAGGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATCAACTCGTTGGAGAAAGTCAAC 343475 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 36276 || ||||| || || || || || ||||| || || || ||| | | | || || ||||| Sbjct 343476 CCAGGCATGAGACCTCGTTTCTTGAGCCAGAAGATTGA-GCAGAAGCTGCCTGAGAAGAA 343534 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 36336 || ||||| || || ||||| | | |||||| | || | ||| || Sbjct 343535 GATACCTTCGACGCAAGCGAAGGCGACGATTCTCTCAGCGAAAGTCTGAGATCCATCGAT 343594 Query 36337 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 |||||| ||||| | ||| || || || ||||| ||||| || || || ||| Sbjct 343595 CCACTTCATGGCCCATTGGGCTTTTTTAGCGACGCAAGGGATTGTTTCGATGGCCCGAAA 343654 Query 36397 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 36456 ||||| || | | || || | ||||| | || || || | | ||||| ||||| || Sbjct 343655 GAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGGAGGAGACTGTACATCTC 343714 Query 36457 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 36516 ||| || || || ||||| || || || || ||||||||| | || || | | || Sbjct 343715 CGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCTTCAGAGACTTG 343774 Query 36517 TACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 36575 || || | ||| || ||| || | ||| || || ||||||||| || || | Sbjct 343775 CACATC-GGACATGAACCGTGAAGCGAGATTCTCGAGAACGATTCCGTCAGATGCGGCGA 343833 Query 36576 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT-AGTTTATTCCAATCA 36634 | || || | || ||||| || || | | || | | ||| || || | ||| || Sbjct 343834 AGAAAGCGAGGACGTGTTTGATGAAGTGCCTCTC-TCCGTCGTTGAGATTCTCCCAGTCG 343892 Query 36635 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 36694 |||| ||||| ||| |||||||| | ||||| || ||||| || || || || Sbjct 343893 CGACCGTCTTGAGATAGATCGACTTCTTCAGCCGTCCAGAAAGATGCTTCGGCTTTCTTG 343952 Query 36695 TACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741 ||||| | |||||| | | | || || ||||| || ||| ||||| Sbjct 343953 TACATCTCCCAGATCTGAGGGTAGTGGATTGGGAACATACAGAATCT 343999 >seq19642 Length=374925 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| ||||| | || | ||| || | || |||| | || ||| |||| |||||| Sbjct 361682 TCCTCCTTGATCGACATAACGAGCAGTATCGTTGAAAACACGCAGCATAGGAACAATACC 361741 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| || || ||||| || || || || |||||| ||||||| |||||| || ||| Sbjct 361742 ATTAGACGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATATTATGAACTGA 361801 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| || || || || ||| || | || || ||| | || ||||| || Sbjct 361802 GACACCAATACCTCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 361861 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 ||| || || |||||||| ||||| | ||||||||||| Sbjct 361862 GCCTTCAATGCTATCATCTTTCATGCAGATCAGAAAACAGCT 361903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657997092543880