Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq19979 145 8e-30 seq20422 98.7 1e-15 seq19630 95.1 1e-14 seq18898 91.5 1e-13 >seq19979 Length=600886 Score = 145 bits (160), Expect = 8e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || ||||||| || ||||| || || ||||| |||||| | Sbjct 465563 CCACCACGGAGACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCC 465504 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || |||||||| || ||||| |||| ||||| ||||| || ||||| Sbjct 465503 AATGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 465444 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| | ||||| | || | ||||||| | |||||| Sbjct 465443 ATACCTTCTTTGTCT-TGAATTTTGGCTTTTACGTTGTCGATGGTGTCGGAGCTCTCCAC 465385 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||| || | ||||| |||||||| || || ||||| || |||||| || Sbjct 465384 CTCAAGAGTGATGGTCTTCCCGGTCAAAGTCTTAACGAAGATCTGCATACCT 465333 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| |||||| || ||||||| || ||||| ||||||||||| || ||| Sbjct 475201 CCTCCACGTAGACGCAAGACCAAGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCT 475142 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || || ||||| || ||||| |||| ||||| || || || ||||| Sbjct 475141 AGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCCGGAGGG 475082 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| || || | | || | ||||||| ||| ||| Sbjct 475081 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCGGAACTCTCAACC 475022 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||| ||||| | || || || || || |||||| Sbjct 475021 TCCAGTGTGATCGTCTTACCGGTGAGGGTCTTGACAAAGATCTGCATA 474974 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| |||||| || ||||||| || ||||| ||||||||||| || || Sbjct 465335 CCTCCACGTAGACGCAAGACCAAGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCG 465276 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | ||||| || || || || ||| |||||| | ||||| || ||||| Sbjct 465275 AGAGTACGCCCATCTTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGA 465216 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || ||| | | || | ||||| | ||||||| Sbjct 465215 ATGCCCTCCTTGTCTTGGATCTTGGCTTTGACATTGTCAATGGTGTCAGAACTCTCCACC 465156 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || |||||||| || || || ||||||||| Sbjct 465155 TCCAAAGTAATGGTCTTTCCCGTCAACGTCTTGACAAAGATTTGCATA 465108 >seq20422 Length=233597 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||| || |||||||| || ||| Sbjct 131593 CCACCACGAAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCT 131534 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || |||||| |||| ||||| ||||| || ||||| Sbjct 131533 AAGGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGG 131474 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| || || ||| || || | | || | ||||||| | ||||||| Sbjct 131473 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTATCAATCGTGTCGGAGCTCTCCACC 131414 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||||||||| | ||| || || || || ||||| Sbjct 131413 TCCAGTGTGATGGTCTTGCCGGTAAGCGTCTTCACAAAGATCTGCAT 131367 >seq19630 Length=159711 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 |||||||||||||| || || ||||||| | |||||||| ||||| || ||||||||| Sbjct 121578 TCTTCGAGCTGTTTTCCGGCGAAGATCAGTCTCTGCTGATCCGGAGGGATTCCTTCTTTG 121637 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| | || ||| ||||| | ||| | Sbjct 121638 TCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATG 121697 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||| | ||||| ||||| || ||||| Sbjct 121698 GTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 121732 >seq18898 Length=1351152 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | ||| | ||| ||||| || ||||| || ||||| Sbjct 748885 CCACCACGGAGACGCAACACAAGGTGGAGCGTGGACTCCTTCTGAATATTGTAATCCGCG 748826 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||||||||| ||||| ||| |||| || | ||||| || || || Sbjct 748825 AGAGTACGTCCGTCTTCGAGCTGCTTACCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 748766 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || ||||| || ||| ||| ||| | | || | ||||| | | ||| || Sbjct 748765 ATTCCCTCTTTATCTTGGATCTTTGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCGACT 748706 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | || ||||||||||| || || || || || |||||| Sbjct 748705 TCGAGGGTGATGGTTTTGCCGGTCAAAGTCTTGACAAAGATCTGCATA 748658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495931569514400