Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq19979 95.1 9e-15 seq20422 91.5 1e-13 seq20655 84.2 2e-11 seq19059 84.2 2e-11 >seq19979 Length=600886 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || |||| ||||||||||| ||| ||||| || | |||||||||| | Sbjct 464879 CCACCACGGAGCCTTAGCACCAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGCC 464820 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| |||| ||||| || || || ||||| || | | ||| ||||| | || Sbjct 464819 AAAGTACGGCCGTCTTCCAACTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGA 464760 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| |||| || || | | |||||| | || || Sbjct 464759 ATGCCCTCCTTATCCTGGATCTTGGCTTTAACGTTGTCGATTGTGTCAGAACTTTCCACC 464700 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| |||||||| || || || || || || ||||| Sbjct 464699 TCAAGGGTGATAGTCTTTCCGGTGAGTGTCTTGACGAAGATCTGCAT 464653 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || ||||| ||||| |||| ||| ||||| || | ||||||||||| | Sbjct 474517 CCACCACGGAGCCTTAAGACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAATCGGCC 474458 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| | || ||||| || || ||||| || || | | ||| ||||| | | Sbjct 474457 AAAGTACGTCCATCTTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGTA 474398 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | || || || || ||| ||| ||||||| || | | |||||| ||| || | Sbjct 474397 ATGCCCTCCTTATC-CTGAATCTTGGCTTTGACGTTGTCGATTGTGTC-AGAGCTTTCCA 474340 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || ||||| |||||||| || || || || || || ||||| Sbjct 474339 CCTCAAGGGTGATAGTCTTTCCGGTGAGTGTCTTGACGAAGATCTGCAT 474291 >seq20422 Length=233597 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||||||||| | |||||||| || | || |||||| || | ||||||||||| Sbjct 131138 GCCTCCACGCAGACGCAACACCAAGTGAAGCGTAGACTCCTTCTGAATATTGTAATCGGC 131079 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || || | || || | || || || || || || | ||||| ||||| | || Sbjct 131078 CAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGG 131019 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||| ||||| || |||| |||| || || ||| |||||| ||| || | Sbjct 131018 AATACCCTCTTTGTCCTGGATCTTGGCTTTAACGTTGTCAATAGTGTCG-GAGCTTTCAA 130960 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || ||||| ||||| || || || || ||||| || ||||| Sbjct 130959 CCTCCAAAGTGATAGTCTTTCCCGTCAGGGTCTTGACAAAGATCTGCAT 130911 >seq20655 Length=190867 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | |||||||| |||| ||| |||||| || | ||||||||||| Sbjct 174445 CCACCACGGAGACGCAACACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAATCGGCT 174504 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| |||| ||||| || || ||||| || || | | || ||||| | || Sbjct 174505 AAAGTACGGCCGTCTTCCAACTGCTTACCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 174564 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || ||| ||| |||| || || | | ||||| ||| || | Sbjct 174565 ATGCCTTCCTTATC-CTGAATCTTGGCTTTAACGTTGTCGATCGTGTC-AGAGCTTTCCA 174622 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || |||||||| ||||| || || || || ||||| Sbjct 174623 CCTCGAGGGTGATCGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 174671 >seq19059 Length=274371 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | |||||||| |||| ||| |||||| || | ||||||||||| Sbjct 257949 CCACCACGGAGACGCAACACCAAGTGGAGAGTCGACTCCTTCTGGATATTGTAATCGGCT 258008 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| |||| ||||| || || ||||| || || | | || ||||| | || Sbjct 258009 AAAGTACGGCCGTCTTCCAACTGCTTACCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 258068 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || ||| ||| |||| || || | | ||||| ||| || | Sbjct 258069 ATGCCTTCCTTATC-CTGAATCTTGGCTTTAACGTTGTCGATCGTGTC-AGAGCTTTCCA 258126 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || |||||||| ||||| || || || || ||||| Sbjct 258127 CCTCGAGGGTGATCGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 258175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381270333902706