Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq20199 179 5e-40 >seq20199 Length=1256174 Score = 179 bits (198), Expect = 5e-40 Identities = 404/599 (67%), Gaps = 6/599 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || |||||||||||||| | || || |||| || || |||||||| || || | Sbjct 343416 CAGGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATCAACTCGTTGGAGAAAGTCAAC 343475 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 || ||||| || || || || || ||||| || || || ||| | | | || || ||||| Sbjct 343476 CCAGGCATGAGACCTCGTTTCTTGAGCCAGAAGATTGA-GCAGAAGCTGCCTGAGAAGAA 343534 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 42243 ||| ||||| || || ||||| | | |||||| | || | ||| || Sbjct 343535 GATACCTTCGACGCAAGCGAAGGCGACGATTCTCTCAGCGAAAGTCTGAGATCCATCGAT 343594 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 |||||| ||||| | ||| || || || ||||| || ||||| ||||| ||| Sbjct 343595 CCACTTCATGGCCCATTGGGCTTTTTTAGCGACGCAAGGGATTGTTTCGATGGCCCGAAA 343654 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 ||||| || | | || || | ||||| | || || |||| | ||||| ||||| || Sbjct 343655 GAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGGAGGAGACTGTACATCTC 343714 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 || || || || ||||| || ||||| || ||||||||| | || || | || || Sbjct 343715 CGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCTTCAGAGACTTG 343774 Query 42424 TACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAA 42482 || || | ||| || ||| ||| | ||| ||| || ||||||||| || || | Sbjct 343775 CACATC-GGACATGAACCGTGAAGCGAGATTCTCGAGAACGATTCCGTCAGATGCGGCGA 343833 Query 42483 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT-AATTTATTCCAATCA 42541 | || || | || ||||| || || | | || |||| ||| | || | ||| || Sbjct 343834 AGAAAGCGAGGACGTGTTTGATGAAGTGCCTCTC-TCCGTCGTTGAGATTCTCCCAGTCG 343892 Query 42542 TTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTA 42601 |||| ||||| ||| |||||||| ||||||| || |||||||| || || || Sbjct 343893 CGACCGTCTTGAGATAGATCGACTTCTTCAGCCGTCCAGAAAGATGCTTCGGCTTTCTTG 343952 Query 42602 TACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGG 42660 ||||| | |||||| | | | || || |||||||| ||| ||||| | ||| |||| Sbjct 343953 TACATCTCCCAGATCTGAGGGTAGTGGATTGGGAACATACAGAATCTGTCTGGGGTTGG 344011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670960031001320