Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sisymbrium_20irio_20[genbank_20GCA_5F000411075.1_202013-06-14] 21,357 sequences; 245,550,082 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq19979 123 3e-23 seq20655 87.8 2e-12 seq20422 87.8 2e-12 seq19059 87.8 2e-12 seq21172 84.2 2e-11 seq18898 82.4 8e-11 >seq19979 Length=600886 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || || |||| || || || || || |||||||||||| | Sbjct 465563 CCACCACGGAGACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCC 465504 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| || ||||| || || ||||| |||| ||||| ||||| || ||||| Sbjct 465503 AATGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 465444 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| ||||| | || | ||||| | | || || Sbjct 465443 ATACCTTCTTTGTCTTGAATTTTGGCTTTTACGTTGTCGATGGTGTCGGAGCTCTCCACC 465384 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| ||| | ||||| |||||||| || || ||||| || |||||| || Sbjct 465383 TCAAGAGTGATGGTCTTCCCGGTCAAAGTCTTAACGAAGATCTGCATACCT 465333 >seq20655 Length=190867 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | |||||| || || |||| || || || || || |||||||| ||| Sbjct 173760 GCCACCACGGAGACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 173819 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | ||||| || || || ||||| |||| ||||| ||||| || ||||| Sbjct 173820 CAAGGTACGACCATCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 173879 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || || || ||| | | || | ||||| | | || || Sbjct 173880 AATACCTTCCTTATCTTGGATCTTAGCTTTCACGTTATCAATGGTGTCGGAGCTCTCCAC 173939 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| || ||||||||||| ||||| || ||||| Sbjct 173940 CTCTAGAGTGATGGTCTTCCCTGTCAATGTTTTAACGAAGATCTGCAT 173987 >seq20422 Length=233597 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || || |||| ||| || || ||||| || ||||| || | Sbjct 130909 CCACCACGGAGACGCAATACCAAGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCAGCC 130850 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || |||||| || || || ||||| |||||| | ||||| || ||||| Sbjct 130849 AATGTTCTGCCGTCTTCAAGCTGCTTCCCAGCGAAGATCAATCTCTGCTGGTCCGGAGGG 130790 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| ||| ||| || | | || | || || | | || || Sbjct 130789 ATACCCTCCTTGTCTTGAATCTTTGCCTTAACATTGTCGATGGTATCAGAGCTCTCAACC 130730 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| ||||||||||| || || || || |||||| Sbjct 130729 TCCAAAGTGATAGTCTTTCCGGTCAATGTCTTGACAAAGATCTGCATA 130682 >seq19059 Length=274371 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | |||||| || || |||| || || || || || |||||||| ||| Sbjct 257264 GCCACCACGGAGACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 257323 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | ||||| || || || ||||| |||| ||||| ||||| || ||||| Sbjct 257324 CAAGGTACGACCATCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 257383 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || || || ||| | | || | ||||| | | || || Sbjct 257384 AATACCTTCCTTATCTTGGATCTTAGCTTTCACGTTATCAATGGTGTCGGAGCTCTCCAC 257443 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| || ||||||||||| ||||| || ||||| Sbjct 257444 CTCTAGAGTGATGGTCTTCCCTGTCAATGTTTTAACGAAGATCTGCAT 257491 >seq21172 Length=998197 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/122 (78%), Gaps = 4/122 (3%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGC-TCGAG 143029 ||| || | ||||| ||||| ||||| || ||||||||||| ||| | ||| | || | Sbjct 271982 CAAGACGAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCCGCT-AGTGTTCGTCCA- 271925 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| ||||| ||||| ||| | ||||| | || ||||| || ||||| ||||||||| Sbjct 271924 TCTTCCAGTTGCTTACCGGCAAATATCAGCCTCTGTTGATCTGGTGGTATACCTTCTTTG 271865 Query 143090 TC 143091 || Sbjct 271864 TC 271863 >seq18898 Length=1351152 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | ||| ||||||| || || || || || ||||||||||| Sbjct 749113 CCACCACGTAGACGAAGAACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCA 749054 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||| ||||| || || ||||| |||| || | |||||||| || || Sbjct 749053 AGCGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGCTGATCTGGTGGG 748994 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || || | | || | |||||| | | || || Sbjct 748993 ATCCCTTCCTTGTCCTGAATCTTAGCCTTGACGTTATCGATCGTGTCAGAGCTCTCAACC 748934 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| || ||||| || || || || || |||||| Sbjct 748933 TCCAAAGTAATAGTCTTTCCTGTCAAAGTCTTGACAAAGATCTGCATA 748886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506879046168240